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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001804)
Anticodon = TAA
HIT:
16 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45178 (1 seq.)
>SRA1021275
SRR035083.234382
454 Sequencing (SRP001804)
138
47
-
Leu
TAA
[SRA]
Identical group No.66799 (3 seq.)
>SRA1021071
SRR035083.205460
454 Sequencing (SRP001804)
401
314
-
Leu
TAA
[SRA]
>SRA1021452
SRR035083.260714
454 Sequencing (SRP001804)
255
168
-
Leu
TAA
[SRA]
>SRA1039891
SRR035090.594196
454 Sequencing (SRP001811)
236
149
-
Leu
TAA
[SRA]
Identical group No.71876 (2 seq.)
>SRA1019977
SRR035083.34967
454 Sequencing (SRP001804)
89
176
+
Leu
TAA
[SRA]
>SRA1020470
SRR035083.119680
454 Sequencing (SRP001804)
89
176
+
Leu
TAA
[SRA]
Identical group No.71879 (1 seq.)
>SRA1021194
SRR035083.221987
454 Sequencing (SRP001804)
424
337
-
Leu
TAA
[SRA]
Identical group No.71881 (1 seq.)
>SRA1022273
SRR035083.379384
454 Sequencing (SRP001804)
477
564
+
Leu
TAA
[SRA]
Identical group No.72797 (101 seq.)
>WENV170613785
FUWD012820291
[FUWD] metagenome; unknown
783
869
+
Leu
TAA
[ENA]
¢þ
>WENV170613997
FUWD012823314
[FUWD] metagenome; unknown
896
810
-
Leu
TAA
[ENA]
¢þ
>WENV170614169
FUWD012826185
[FUWD] metagenome; unknown
387
475
+
Leu
TAA
[ENA]
¢þ
>SRA1018023
SRR035082.228138
454 Sequencing (SRP001803)
412
324
-
Leu
TAA
[SRA]
>SRA1019329
SRR035082.436467
454 Sequencing (SRP001803)
81
167
+
Leu
TAA
[SRA]
>SRA1019844
SRR035083.1508
454 Sequencing (SRP001804)
149
63
-
Leu
TAA
[SRA]
>SRA1019884
SRR035083.13156
454 Sequencing (SRP001804)
41
127
+
Leu
TAA
[SRA]
>SRA1019963
SRR035083.30915
454 Sequencing (SRP001804)
90
176
+
Leu
TAA
[SRA]
>SRA1020022
SRR035083.42824
454 Sequencing (SRP001804)
196
110
-
Leu
TAA
[SRA]
>SRA1020067
SRR035083.52483
454 Sequencing (SRP001804)
90
176
+
Leu
TAA
[SRA]
>SRA1020128
SRR035083.60775
454 Sequencing (SRP001804)
167
253
+
Leu
TAA
[SRA]
>SRA1020155
SRR035083.64180
454 Sequencing (SRP001804)
51
137
+
Leu
TAA
[SRA]
>SRA1020502
SRR035083.125037
454 Sequencing (SRP001804)
404
318
-
Leu
TAA
[SRA]
>SRA1020524
SRR035083.130464
454 Sequencing (SRP001804)
100
188
+
Leu
TAA
[SRA]
>SRA1020538
SRR035083.131275
454 Sequencing (SRP001804)
49
135
+
Leu
TAA
[SRA]
>SRA1020556
SRR035083.134290
454 Sequencing (SRP001804)
137
225
+
Leu
TAA
[SRA]
>SRA1020571
SRR035083.136471
454 Sequencing (SRP001804)
430
342
-
Leu
TAA
[SRA]
>SRA1020582
SRR035083.137882
454 Sequencing (SRP001804)
196
110
-
Leu
TAA
[SRA]
>SRA1020616
SRR035083.141102
454 Sequencing (SRP001804)
49
135
+
Leu
TAA
[SRA]
>SRA1020831
SRR035083.170880
454 Sequencing (SRP001804)
423
337
-
Leu
TAA
[SRA]
>SRA1020971
SRR035083.191376
454 Sequencing (SRP001804)
242
156
-
Leu
TAA
[SRA]
>SRA1020980
SRR035083.192602
454 Sequencing (SRP001804)
362
276
-
Leu
TAA
[SRA]
>SRA1020996
SRR035083.195010
454 Sequencing (SRP001804)
237
151
-
Leu
TAA
[SRA]
>SRA1021043
SRR035083.202537
454 Sequencing (SRP001804)
100
188
+
Leu
TAA
[SRA]
>SRA1021191
SRR035083.221448
454 Sequencing (SRP001804)
127
39
-
Leu
TAA
[SRA]
>SRA1021271
SRR035083.234136
454 Sequencing (SRP001804)
167
253
+
Leu
TAA
[SRA]
>SRA1021432
SRR035083.257887
454 Sequencing (SRP001804)
121
209
+
Leu
TAA
[SRA]
>SRA1021443
SRR035083.259295
454 Sequencing (SRP001804)
139
51
-
Leu
TAA
[SRA]
>SRA1021485
SRR035083.264872
454 Sequencing (SRP001804)
304
219
-
Leu
TAA
[SRA]
>SRA1021503
SRR035083.267176
454 Sequencing (SRP001804)
464
378
-
Leu
TAA
[SRA]
>SRA1021511
SRR035083.267823
454 Sequencing (SRP001804)
257
171
-
Leu
TAA
[SRA]
>SRA1021553
SRR035083.272419
454 Sequencing (SRP001804)
416
330
-
Leu
TAA
[SRA]
>SRA1021599
SRR035083.278886
454 Sequencing (SRP001804)
49
135
+
Leu
TAA
[SRA]
>SRA1021689
SRR035083.292767
454 Sequencing (SRP001804)
351
263
-
Leu
TAA
[SRA]
>SRA1021904
SRR035083.326812
454 Sequencing (SRP001804)
127
39
-
Leu
TAA
[SRA]
>SRA1021975
SRR035083.333687
454 Sequencing (SRP001804)
183
97
-
Leu
TAA
[SRA]
>SRA1022399
SRR035083.400422
454 Sequencing (SRP001804)
132
46
-
Leu
TAA
[SRA]
>SRA1022502
SRR035083.414615
454 Sequencing (SRP001804)
49
135
+
Leu
TAA
[SRA]
>SRA1022591
SRR035083.429730
454 Sequencing (SRP001804)
180
266
+
Leu
TAA
[SRA]
>SRA1022774
SRR035083.458481
454 Sequencing (SRP001804)
212
300
+
Leu
TAA
[SRA]
>SRA1022803
SRR035083.463340
454 Sequencing (SRP001804)
177
263
+
Leu
TAA
[SRA]
>SRA1022812
SRR035083.465029
454 Sequencing (SRP001804)
110
198
+
Leu
TAA
[SRA]
>SRA1022818
SRR035083.467087
454 Sequencing (SRP001804)
159
71
-
Leu
TAA
[SRA]
>SRA1022842
SRR035083.470953
454 Sequencing (SRP001804)
242
156
-
Leu
TAA
[SRA]
>SRA1022864
SRR035083.475659
454 Sequencing (SRP001804)
78
166
+
Leu
TAA
[SRA]
>SRA1023020
SRR035083.506620
454 Sequencing (SRP001804)
49
135
+
Leu
TAA
[SRA]
>SRA1023094
SRR035083.519043
454 Sequencing (SRP001804)
298
210
-
Leu
TAA
[SRA]
>SRA1030082
SRR035087.224859
454 Sequencing (SRP001808)
345
431
+
Leu
TAA
[SRA]
>SRA1030482
SRR035087.285365
454 Sequencing (SRP001808)
53
139
+
Leu
TAA
[SRA]
>SRA1032521
SRR035088.37233
454 Sequencing (SRP001809)
66
152
+
Leu
TAA
[SRA]
>SRA1032889
SRR035088.122684
454 Sequencing (SRP001809)
232
318
+
Leu
TAA
[SRA]
>SRA1033156
SRR035088.185555
454 Sequencing (SRP001809)
340
254
-
Leu
TAA
[SRA]
>SRA1033284
SRR035088.214268
454 Sequencing (SRP001809)
127
213
+
Leu
TAA
[SRA]
>SRA1036452
SRR035089.526349
454 Sequencing (SRP001810)
128
214
+
Leu
TAA
[SRA]
>SRA1036896
SRR035090.34285
454 Sequencing (SRP001811)
177
265
+
Leu
TAA
[SRA]
>SRA1036978
SRR035090.50533
454 Sequencing (SRP001811)
173
87
-
Leu
TAA
[SRA]
>SRA1037110
SRR035090.74799
454 Sequencing (SRP001811)
209
295
+
Leu
TAA
[SRA]
>SRA1037172
SRR035090.87215
454 Sequencing (SRP001811)
234
148
-
Leu
TAA
[SRA]
>SRA1037572
SRR035090.156929
454 Sequencing (SRP001811)
101
15
-
Leu
TAA
[SRA]
>SRA1037728
SRR035090.181266
454 Sequencing (SRP001811)
234
148
-
Leu
TAA
[SRA]
>SRA1037819
SRR035090.201283
454 Sequencing (SRP001811)
313
401
+
Leu
TAA
[SRA]
>SRA1037860
SRR035090.206684
454 Sequencing (SRP001811)
80
166
+
Leu
TAA
[SRA]
>SRA1037917
SRR035090.218140
454 Sequencing (SRP001811)
425
337
-
Leu
TAA
[SRA]
>SRA1037948
SRR035090.224907
454 Sequencing (SRP001811)
154
68
-
Leu
TAA
[SRA]
>SRA1038070
SRR035090.241611
454 Sequencing (SRP001811)
216
130
-
Leu
TAA
[SRA]
>SRA1038252
SRR035090.273248
454 Sequencing (SRP001811)
191
277
+
Leu
TAA
[SRA]
>SRA1038322
SRR035090.287829
454 Sequencing (SRP001811)
145
59
-
Leu
TAA
[SRA]
>SRA1038398
SRR035090.297426
454 Sequencing (SRP001811)
237
151
-
Leu
TAA
[SRA]
>SRA1038446
SRR035090.306569
454 Sequencing (SRP001811)
318
406
+
Leu
TAA
[SRA]
>SRA1038472
SRR035090.312301
454 Sequencing (SRP001811)
154
68
-
Leu
TAA
[SRA]
>SRA1038529
SRR035090.321237
454 Sequencing (SRP001811)
111
199
+
Leu
TAA
[SRA]
>SRA1038535
SRR035090.322607
454 Sequencing (SRP001811)
315
403
+
Leu
TAA
[SRA]
>SRA1038564
SRR035090.328212
454 Sequencing (SRP001811)
259
345
+
Leu
TAA
[SRA]
>SRA1038652
SRR035090.344148
454 Sequencing (SRP001811)
446
360
-
Leu
TAA
[SRA]
>SRA1038865
SRR035090.382808
454 Sequencing (SRP001811)
313
399
+
Leu
TAA
[SRA]
>SRA1038892
SRR035090.389066
454 Sequencing (SRP001811)
444
356
-
Leu
TAA
[SRA]
>SRA1038934
SRR035090.397276
454 Sequencing (SRP001811)
317
405
+
Leu
TAA
[SRA]
>SRA1039033
SRR035090.411702
454 Sequencing (SRP001811)
259
345
+
Leu
TAA
[SRA]
>SRA1039165
SRR035090.435884
454 Sequencing (SRP001811)
135
47
-
Leu
TAA
[SRA]
>SRA1039170
SRR035090.436890
454 Sequencing (SRP001811)
135
47
-
Leu
TAA
[SRA]
>SRA1039198
SRR035090.441728
454 Sequencing (SRP001811)
265
179
-
Leu
TAA
[SRA]
>SRA1039257
SRR035090.453272
454 Sequencing (SRP001811)
135
47
-
Leu
TAA
[SRA]
>SRA1039371
SRR035090.479543
454 Sequencing (SRP001811)
156
70
-
Leu
TAA
[SRA]
>SRA1039389
SRR035090.482571
454 Sequencing (SRP001811)
318
406
+
Leu
TAA
[SRA]
>SRA1039512
SRR035090.506975
454 Sequencing (SRP001811)
188
274
+
Leu
TAA
[SRA]
>SRA1039622
SRR035090.531751
454 Sequencing (SRP001811)
234
148
-
Leu
TAA
[SRA]
>SRA1039627
SRR035090.532352
454 Sequencing (SRP001811)
194
280
+
Leu
TAA
[SRA]
>SRA1039673
SRR035090.541744
454 Sequencing (SRP001811)
308
394
+
Leu
TAA
[SRA]
>SRA1039701
SRR035090.548287
454 Sequencing (SRP001811)
164
250
+
Leu
TAA
[SRA]
>SRA1039762
SRR035090.561981
454 Sequencing (SRP001811)
308
394
+
Leu
TAA
[SRA]
>SRA1039806
SRR035090.574603
454 Sequencing (SRP001811)
75
161
+
Leu
TAA
[SRA]
>SRA1039915
SRR035090.601436
454 Sequencing (SRP001811)
160
246
+
Leu
TAA
[SRA]
>SRA1039916
SRR035090.601605
454 Sequencing (SRP001811)
101
15
-
Leu
TAA
[SRA]
>SRA1040125
SRR035091.43133
454 Sequencing (SRP001812)
137
49
-
Leu
TAA
[SRA]
>SRA1042257
SRR035091.363467
454 Sequencing (SRP001812)
129
43
-
Leu
TAA
[SRA]
>SRA1045504
SRR035093.108371
454 Sequencing (SRP001814)
251
337
+
Leu
TAA
[SRA]
>SRA1046162
SRR035093.248612
454 Sequencing (SRP001814)
189
103
-
Leu
TAA
[SRA]
>SRA1052724
SRR035098.261756
454 Sequencing (SRP001819)
217
305
+
Leu
TAA
[SRA]
>SRA1052985
SRR035098.313376
454 Sequencing (SRP001819)
31
117
+
Leu
TAA
[SRA]
>SRA1053166
SRR035098.351659
454 Sequencing (SRP001819)
152
66
-
Leu
TAA
[SRA]
>SRA1054408
SRR035099.127032
454 Sequencing (SRP001820)
74
162
+
Leu
TAA
[SRA]
Identical group No.79260 (4 seq.)
>WENV170613025
FUWD012773378
[FUWD] metagenome; unknown
445
357
-
Leu
TAA
[ENA]
¢þ
>SRA1020612
SRR035083.140996
454 Sequencing (SRP001804)
130
218
+
Leu
TAA
[SRA]
>SRA1021806
SRR035083.312373
454 Sequencing (SRP001804)
130
218
+
Leu
TAA
[SRA]
>SRA1021907
SRR035083.326917
454 Sequencing (SRP001804)
130
218
+
Leu
TAA
[SRA]
Identical group No.83985 (2 seq.)
>SRA1022985
SRR035083.499984
454 Sequencing (SRP001804)
305
391
+
Leu
TAA
[SRA]
>SRA1038930
SRR035090.396845
454 Sequencing (SRP001811)
80
166
+
Leu
TAA
[SRA]
Identical group No.86409 (1 seq.)
>SRA1021715
SRR035083.296417
454 Sequencing (SRP001804)
360
271
-
Leu
TAA
[SRA]
Identical group No.98463 (4 seq.)
>WENV170605030
FUWD010442122
[FUWD] metagenome; unknown
263
178
-
Leu
TAA
[ENA]
¢þ
>SRA1020588
SRR035083.138440
454 Sequencing (SRP001804)
136
51
-
Leu
TAA
[SRA]
>SRA1021788
SRR035083.309602
454 Sequencing (SRP001804)
502
417
-
Leu
TAA
[SRA]
>SRA1041498
SRR035091.250551
454 Sequencing (SRP001812)
271
356
+
Leu
TAA
[SRA]
Identical group No.98487 (4 seq.)
>WENV170607776
FUWD010855528
[FUWD] metagenome; unknown
357
272
-
Leu
TAA
[ENA]
¢þ
>SRA1021855
SRR035083.318562
454 Sequencing (SRP001804)
355
270
-
Leu
TAA
[SRA]
>SRA1021941
SRR035083.330114
454 Sequencing (SRP001804)
130
215
+
Leu
TAA
[SRA]
>SRA1038191
SRR035090.261603
454 Sequencing (SRP001811)
268
183
-
Leu
TAA
[SRA]
Identical group No.111501 (1 seq.)
>SRA1021106
SRR035083.208996
454 Sequencing (SRP001804)
94
10
-
Leu
TAA
[SRA]
Identical group No.131682 (2 seq.)
>WENV170611708
FUWD012380333
[FUWD] metagenome; unknown
88
3
-
Leu
TAA
[ENA]
¢þ
>SRA1022637
SRR035083.435960
454 Sequencing (SRP001804)
446
361
-
Leu
TAA
[SRA]
Identical group No.131743 (20 seq.)
>WENV170613786
FUWD012820292
[FUWD] metagenome; unknown
824
910
+
Leu
TAA
[ENA]
¢þ
>SRA1020313
SRR035083.95522
454 Sequencing (SRP001804)
142
56
-
Leu
TAA
[SRA]
>SRA1020345
SRR035083.99985
454 Sequencing (SRP001804)
81
167
+
Leu
TAA
[SRA]
>SRA1021000
SRR035083.195373
454 Sequencing (SRP001804)
141
227
+
Leu
TAA
[SRA]
>SRA1021151
SRR035083.215184
454 Sequencing (SRP001804)
95
9
-
Leu
TAA
[SRA]
>SRA1021252
SRR035083.229372
454 Sequencing (SRP001804)
320
234
-
Leu
TAA
[SRA]
>SRA1021545
SRR035083.271147
454 Sequencing (SRP001804)
128
214
+
Leu
TAA
[SRA]
>SRA1022223
SRR035083.370108
454 Sequencing (SRP001804)
149
235
+
Leu
TAA
[SRA]
>SRA1022428
SRR035083.404133
454 Sequencing (SRP001804)
106
192
+
Leu
TAA
[SRA]
>SRA1033278
SRR035088.212503
454 Sequencing (SRP001809)
164
78
-
Leu
TAA
[SRA]
>SRA1037192
SRR035090.91054
454 Sequencing (SRP001811)
255
169
-
Leu
TAA
[SRA]
>SRA1037730
SRR035090.181539
454 Sequencing (SRP001811)
147
61
-
Leu
TAA
[SRA]
>SRA1037861
SRR035090.206885
454 Sequencing (SRP001811)
1
87
+
Leu
TAA
[SRA]
>SRA1037967
SRR035090.227535
454 Sequencing (SRP001811)
150
236
+
Leu
TAA
[SRA]
>SRA1038447
SRR035090.306814
454 Sequencing (SRP001811)
152
238
+
Leu
TAA
[SRA]
>SRA1038848
SRR035090.379455
454 Sequencing (SRP001811)
151
237
+
Leu
TAA
[SRA]
>SRA1038942
SRR035090.397972
454 Sequencing (SRP001811)
152
238
+
Leu
TAA
[SRA]
>SRA1039545
SRR035090.512823
454 Sequencing (SRP001811)
334
248
-
Leu
TAA
[SRA]
>SRA1039863
SRR035090.585814
454 Sequencing (SRP001811)
152
238
+
Leu
TAA
[SRA]
>SRA1049992
SRR035095.173355
454 Sequencing (SRP001816)
324
238
-
Leu
TAA
[SRA]
Identical group No.131820 (4 seq.)
>WENV170623422
FUWD013150644
[FUWD] metagenome; unknown
549
464
-
Leu
TAA
[ENA]
¢þ
>WENV170631689
FUWD013361701
[FUWD] metagenome; unknown
549
464
-
Leu
TAA
[ENA]
¢þ
>SRA1021294
SRR035083.238311
454 Sequencing (SRP001804)
94
9
-
Leu
TAA
[SRA]
>SRA1021848
SRR035083.317019
454 Sequencing (SRP001804)
230
315
+
Leu
TAA
[SRA]
Identical group No.179157 (2 seq.)
>SRA1019941
SRR035083.26152
454 Sequencing (SRP001804)
288
204
-
Leu
TAA
[SRA]
>SRA1020179
SRR035083.67625
454 Sequencing (SRP001804)
287
203
-
Leu
TAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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