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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001804)
Anticodon = TAT
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.269429 (1 seq.)
>SRA1021831
SRR035083.314563
454 Sequencing (SRP001804)
197
120
-
Ile
TAT
[SRA]
Identical group No.300557 (6 seq.)
>WENV170622509
FUWD013107458
[FUWD] metagenome; unknown
509
433
-
Ile
TAT
[ENA]
¢þ
>WENV170630734
FUWD013321778
[FUWD] metagenome; unknown
509
433
-
Ile
TAT
[ENA]
¢þ
>SRA1023013
SRR035083.504477
454 Sequencing (SRP001804)
162
86
-
Ile
TAT
[SRA]
>SRA1030679
SRR035087.312485
454 Sequencing (SRP001808)
220
296
+
Ile
TAT
[SRA]
>SRA1043085
SRR035092.42338
454 Sequencing (SRP001813)
38
114
+
Ile
TAT
[SRA]
>SRA1043395
SRR035092.107418
454 Sequencing (SRP001813)
8
84
+
Ile
TAT
[SRA]
Identical group No.357955 (2 seq.)
>WENV170607766
FUWD010854946
[FUWD] metagenome; unknown
653
729
+
Ile
TAT
[ENA]
¢þ
>SRA1020955
SRR035083.190096
454 Sequencing (SRP001804)
106
182
+
Ile
TAT
[SRA]
Identical group No.446044 (1 seq.)
>SRA1022220
SRR035083.369740
454 Sequencing (SRP001804)
226
150
-
Ile
TAT
[SRA]
Identical group No.446068 (1 seq.)
>SRA1021021
SRR035083.198696
454 Sequencing (SRP001804)
285
211
-
Ile
TAT
[SRA]
Identical group No.484126 (6 seq.)
>WENV170607761
FUWD010854660
[FUWD] metagenome; unknown
375
450
+
Ile
TAT
[ENA]
¢þ
>WENV170611740
FUWD012386527
[FUWD] metagenome; unknown
296
221
-
Ile
TAT
[ENA]
¢þ
>SRA1020570
SRR035083.136071
454 Sequencing (SRP001804)
108
183
+
Ile
TAT
[SRA]
>SRA1021341
SRR035083.245656
454 Sequencing (SRP001804)
296
221
-
Ile
TAT
[SRA]
>SRA1029317
SRR035087.108151
454 Sequencing (SRP001808)
340
265
-
Ile
TAT
[SRA]
>WENV070528
AACY023812501
Marine microbial communities from Global Ocean Sampling (GOS)
107
182
+
Ile
TAT
[ENA]
Identical group No.647174 (1 seq.)
>SRA1020908
SRR035083.183523
454 Sequencing (SRP001804)
408
483
+
Ile
TAT
[SRA]
Identical group No.775585 (1 seq.)
>SRA1021142
SRR035083.213939
454 Sequencing (SRP001804)
294
220
-
Ile
TAT
[SRA]
Identical group No.775596 (1 seq.)
>SRA1021884
SRR035083.324035
454 Sequencing (SRP001804)
109
183
+
Ile
TAT
[SRA]
Identical group No.775619 (1 seq.)
>SRA1022127
SRR035083.356263
454 Sequencing (SRP001804)
17
88
+
Ile
TAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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