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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001804)
Anticodon = TCG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254150 (3 seq.)
>WENV170612363
FUWD012589047
[FUWD] metagenome; unknown
403
329
-
Arg
TCG
[ENA]
¢þ
>SRA1019974
SRR035083.33181
454 Sequencing (SRP001804)
303
229
-
Arg
TCG
[SRA]
>SRA1022446
SRR035083.406092
454 Sequencing (SRP001804)
89
15
-
Arg
TCG
[SRA]
Identical group No.357703 (3 seq.)
>WENV170603296
FUWD010299431
[FUWD] metagenome; unknown
3
79
+
Arg
TCG
[ENA]
¢þ
>SRA1020392
SRR035083.106807
454 Sequencing (SRP001804)
168
244
+
Arg
TCG
[SRA]
>SRA1033391
SRR035088.244145
454 Sequencing (SRP001809)
366
290
-
Arg
TCG
[SRA]
Identical group No.373105 (3 seq.)
>W1711412284
MGUA01000033
Elusimicrobia
Elusimicrobia bacterium GWB2_63_22 (MGUA)
24546
24470
-
Arg
TCG
[ENA]
¡û
>W1711412534
MGUI01000008
Elusimicrobia
Elusimicrobia bacterium GWD2_63_28 (MGUI)
11515
11589
+
Arg
TCG
[ENA]
¡û
>SRA1020647
SRR035083.146112
454 Sequencing (SRP001804)
282
357
+
Arg
TCG
[SRA]
Identical group No.446058 (1 seq.)
>SRA1022836
SRR035083.469191
454 Sequencing (SRP001804)
209
133
-
Arg
TCG
[SRA]
Identical group No.654477 (4 seq.)
>WENV170608036
FUWD010885567
[FUWD] metagenome; unknown
98
169
+
Arg
TCG
[ENA]
¢þ
>SRA1020666
SRR035083.149126
454 Sequencing (SRP001804)
47
118
+
Arg
TCG
[SRA]
>SRA1028849
SRR035087.20220
454 Sequencing (SRP001808)
48
119
+
Arg
TCG
[SRA]
>SRA1034798
SRR035089.175415
454 Sequencing (SRP001810)
107
178
+
Arg
TCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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