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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001804)
Anticodon = TGA
HIT:
13 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.1713 (3 seq.)
>WENV170611711
FUWD012381480
[FUWD] metagenome; unknown
215
311
+
Ser
TGA
[ENA]
¢þ
>SRA1020170
SRR035083.66032
454 Sequencing (SRP001804)
214
310
+
Ser
TGA
[SRA]
>SRA1035789
SRR035089.374935
454 Sequencing (SRP001810)
183
279
+
Ser
TGA
[SRA]
Identical group No.29973 (1 seq.)
>SRA1022671
SRR035083.439929
454 Sequencing (SRP001804)
263
172
-
Ser
TGA
[SRA]
Identical group No.45182 (2 seq.)
>SRA1022604
SRR035083.431107
454 Sequencing (SRP001804)
159
71
-
Ser
TGA
[SRA]
>SRA1022918
SRR035083.485815
454 Sequencing (SRP001804)
159
71
-
Ser
TGA
[SRA]
Identical group No.45184 (1 seq.)
>SRA1020904
SRR035083.181933
454 Sequencing (SRP001804)
143
233
+
Ser
TGA
[SRA]
Identical group No.79253 (3 seq.)
>WENV170611728
FUWD012385440
[FUWD] metagenome; unknown
68
156
+
Ser
TGA
[ENA]
¢þ
>SRA1021065
SRR035083.204986
454 Sequencing (SRP001804)
69
157
+
Ser
TGA
[SRA]
>SRA1036908
SRR035090.37467
454 Sequencing (SRP001811)
146
234
+
Ser
TGA
[SRA]
Identical group No.88170 (50 seq.)
>W131066932
ANPJ01000009
Bacteroidota
Dokdonia sp. PRO95 [ANPJ]
146102
146189
+
Ser
TGA
[ENA]
¡û
>W131236551
AUML01000035
Bacteroidota
Aquimarina muelleri DSM 19832 [AUML]
28894
28979
+
Ser
TGA
[ENA]
¡û
>C171092551
CP019352
Bacteroidota
Lacinutrix venerupis DOK2-8 [CP019352]
2050334
2050421
+
Ser
TGA
-
¡û
>W141079134
ATLG01000016
Bacteroidota
Cellulophaga baltica 4 [ATLG]
18580
18495
-
Ser
TGA
[ENA]
¡û
>W141079167
ATLH01000017
Bacteroidota
Cellulophaga baltica 13 [ATLH]
25878
25793
-
Ser
TGA
[ENA]
¡û
>W141079202
ATLI01000015
Bacteroidota
Cellulophaga baltica 18 [ATLI]
155064
154979
-
Ser
TGA
[ENA]
¡û
>W141079235
ATLJ01000023
Bacteroidota
Cellulophaga baltica NN016038 [ATLJ]
27965
27880
-
Ser
TGA
[ENA]
¡û
>WENV182581236
OJGX01001230
[OJGX] seawater metagenome; Sea water
8767
8854
+
Ser
TGA
[ENA]
¢þ
>W141274875
JACA01000026
Bacteroidota
Aquimarina macrocephali JAMB N27 [JACA]
98119
98206
+
Ser
TGA
[ENA]
¡û
>W141274893
JACB01000014
Bacteroidota
Aquimarina megaterium XH134 [JACB]
58960
58873
-
Ser
TGA
[ENA]
¡û
>W141276307
JADR01000001
Bacteroidota
Olleya marilimosa CAM030 [JADR]
413982
413895
-
Ser
TGA
[ENA]
¡û
>WENV170015771
AZII01008327
[AZII] marine sediment metagenome; enrichment culture of sample MGS-BIZ(AMM) from oil contaminated site at the Bizerte
821
908
+
Ser
TGA
[ENA]
¢þ
>WENV170298280
CESF01083472
[CESF] marine metagenome genome assembly TARA_093_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
210535
210622
+
Ser
TGA
[ENA]
¢þ
>WENV170535591
CEWP01079521
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
10835
10750
-
Ser
TGA
[ENA]
¢þ
>WENV170537576
CEWR01015369
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
189
102
-
Ser
TGA
[ENA]
¢þ
>WENV170782032
MAAC01006654
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
18650
18737
+
Ser
TGA
[ENA]
¢þ
>WENV170782705
MAAC01011176
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
192436
192523
+
Ser
TGA
[ENA]
¢þ
>WENV170783839
MAAC01019214
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
290959
291046
+
Ser
TGA
[ENA]
¢þ
>WENV170942631
MDTG01381400
[MDTG] marine metagenome; seawater
210442
210529
+
Ser
TGA
[ENA]
¢þ
>C181175211
CP029151
Bacteroidota
Dokdonia sp. Dokd-P16 [CP029151]
33618
33533
-
Ser
TGA
-
¡û
>C191083485
CP031964
Bacteroidota
Flavobacteriaceae bacterium AU392 [CP031964]
1729724
1729639
-
Ser
TGA
-
¡û
>W141563309
JHZX01000001
Bacteroidota
Sediminibacter sp. Hel_I_10 [JHZX]
219231
219316
+
Ser
TGA
[ENA]
¡û
>W1910693668
MDGO01000013
Bacteroidota
Gaetbulibacter sp. 5U11 [MDGO]
723677
723762
+
Ser
TGA
[ENA]
¡û
>W1911535365
OMKA01000003
Bacteroidota
Aquimarina sp. Aq78 [OMKA]
38214
38299
+
Ser
TGA
[ENA]
¡û
>W1911535425
OMKB01000014
Bacteroidota
Aquimarina sp. Aq349 [OMKB]
649374
649289
-
Ser
TGA
[ENA]
¡û
>W1911535545
OMKF01000021
Bacteroidota
Aquimarina sp. Aq78 [OMKF]
38148
38233
+
Ser
TGA
[ENA]
¡û
>W1911538854
OMPD01000014
Bacteroidota
Aquimarina sp. AU58 [OMPD]
2145286
2145201
-
Ser
TGA
[ENA]
¡û
>W1911538927
OMPF01000016
Bacteroidota
Aquimarina sp. AU119 [OMPF]
1403
1488
+
Ser
TGA
[ENA]
¡û
>W1810172974
PJMS01000001
Bacteroidota
Aquimarina sp. MAR_2010_214 MAR_2010_214 Mar_2010_214 [PJMS]
3014464
3014379
-
Ser
TGA
[ENA]
¡û
>SRA1021069
SRR035083.205049
454 Sequencing (SRP001804)
24
109
+
Ser
TGA
[SRA]
>C151061207
CP009887
Bacteroidota
Cellulophaga baltica NN016038 [CP009887]
3402172
3402087
-
Ser
TGA
[Ensembl]
¡û
>C151062882
CP009976
Bacteroidota
Cellulophaga baltica 18 [CP009976]
3429331
3429246
-
Ser
TGA
[Ensembl]
¡û
>W1510012885
BBNQ01000003
Bacteroidota
Algibacter lectus JCM 19300 [BBNQ]
38766
38679
-
Ser
TGA
[ENA]
¡û
>W1510013019
BBNU01000010
Bacteroidota
Algibacter lectus JCM 19274 [BBNU]
139944
139857
-
Ser
TGA
[ENA]
¡û
>C11104724
CP002453
Bacteroidota
Cellulophaga algicola DSM 14237 [CP002453]
4140008
4139923
-
Ser
TGA
[Ensembl]
¡û
>C11111612
CP002528
Bacteroidota
Dokdonia sp. 4H-3-7-5 [CP002528]
2608123
2608210
+
Ser
TGA
[Ensembl]
¡û
>W1511320927
JQCT01000011
Bacteroidota
Cellulophaga sp. E6(2014) E6[2014] [JQCT]
15759
15674
-
Ser
TGA
[ENA]
¡û
>W1511534162
JYNQ01000001
Bacteroidota
Lacinutrix sp. Hel_I_90 Hel_I_90 Hel_I _90 [JYNQ]
250360
250273
-
Ser
TGA
[ENA]
¡û
>C161105092
HG315671
Bacteroidota
Formosa agariphila KMM 3901 type strain: KMM 3901 [HG315671]
2981702
2981615
-
Ser
TGA
[Ensembl]
¡û
>W121031934
AHHE02000040
Bacteroidota
Aquimarina agarilytica ZC1 [AHHE]
11727
11640
-
Ser
TGA
[ENA]
¡û
>W121063899
AJLT01000087
Bacteroidota
Gillisia marina CBA3202 [AJLT]
1312
1399
+
Ser
TGA
[ENA]
¡û
>W1610506859
FLRG01000010
Bacteroidota
Aquimarina megaterium [FLRG]
131386
131299
-
Ser
TGA
[ENA]
¡û
>WENV078344
AAGA01000308
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
3106
3195
+
Ser
TGA
[ENA]
>W1710499077
FLRG01000010
Bacteroidota
Aquimarina megaterium [FLRG]
131386
131299
-
Ser
TGA
[ENA]
¡û
>W1710514689
FNBD01000006
Bacteroidota
Cellulophaga baltica [FNBD]
40490
40405
-
Ser
TGA
[ENA]
¡û
>W1710528640
FNNJ01000011
Bacteroidota
Lutibacter oricola [FNNJ]
101068
100981
-
Ser
TGA
[ENA]
¡û
>W1710532550
FNQK01000013
Bacteroidota
Bizionia paragorgiae [FNQK]
53586
53673
+
Ser
TGA
[ENA]
¡û
>W1710558017
FOLN01000001
Bacteroidota
Algibacter lectus [FOLN]
26436
26523
+
Ser
TGA
[ENA]
¡û
>W1710559050
FOMI01000007
Bacteroidota
Algibacter pectinivorans [FOMI]
40770
40857
+
Ser
TGA
[ENA]
¡û
>W1710587937
FQYY01000004
Bacteroidota
Mesonia phycicola [FQYY]
234427
234514
+
Ser
TGA
[ENA]
¡û
Identical group No.111502 (1 seq.)
>SRA1021818
SRR035083.313310
454 Sequencing (SRP001804)
188
274
+
Ser
TGA
[SRA]
Identical group No.153853 (77 seq.)
>C005323
CP000108
Chlorobiota
Chlorobium chlorochromatii [CP000108]
570415
570333
-
Ser
TGA
[Ensembl]
¡û
>C018270
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
1190073
1189991
-
Ser
TGA
[Ensembl]
¡û
>WENV170613664
FUWD012815692
[FUWD] metagenome; unknown
1122
1205
+
Ser
TGA
[ENA]
¢þ
>W09103366
AAJD01000012
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
2592
2509
-
Ser
TGA
[ENA]
¡û
>SRA1018543
SRR035082.307913
454 Sequencing (SRP001803)
111
28
-
Ser
TGA
[SRA]
>SRA1020077
SRR035083.54387
454 Sequencing (SRP001804)
93
10
-
Ser
TGA
[SRA]
>SRA1020315
SRR035083.95829
454 Sequencing (SRP001804)
42
125
+
Ser
TGA
[SRA]
>SRA1020333
SRR035083.98303
454 Sequencing (SRP001804)
208
125
-
Ser
TGA
[SRA]
>SRA1020420
SRR035083.112053
454 Sequencing (SRP001804)
91
8
-
Ser
TGA
[SRA]
>SRA1020511
SRR035083.127693
454 Sequencing (SRP001804)
206
123
-
Ser
TGA
[SRA]
>SRA1020618
SRR035083.141439
454 Sequencing (SRP001804)
42
125
+
Ser
TGA
[SRA]
>SRA1020676
SRR035083.151027
454 Sequencing (SRP001804)
113
196
+
Ser
TGA
[SRA]
>SRA1020731
SRR035083.156910
454 Sequencing (SRP001804)
260
343
+
Ser
TGA
[SRA]
>SRA1021004
SRR035083.196152
454 Sequencing (SRP001804)
246
329
+
Ser
TGA
[SRA]
>SRA1021133
SRR035083.213223
454 Sequencing (SRP001804)
170
253
+
Ser
TGA
[SRA]
>SRA1021195
SRR035083.222248
454 Sequencing (SRP001804)
43
126
+
Ser
TGA
[SRA]
>SRA1021243
SRR035083.227941
454 Sequencing (SRP001804)
239
156
-
Ser
TGA
[SRA]
>SRA1021245
SRR035083.228190
454 Sequencing (SRP001804)
92
175
+
Ser
TGA
[SRA]
>SRA1021287
SRR035083.237016
454 Sequencing (SRP001804)
239
156
-
Ser
TGA
[SRA]
>SRA1021498
SRR035083.266198
454 Sequencing (SRP001804)
206
123
-
Ser
TGA
[SRA]
>SRA1021580
SRR035083.275748
454 Sequencing (SRP001804)
371
454
+
Ser
TGA
[SRA]
>SRA1021664
SRR035083.290010
454 Sequencing (SRP001804)
136
53
-
Ser
TGA
[SRA]
>SRA1021811
SRR035083.312690
454 Sequencing (SRP001804)
14
97
+
Ser
TGA
[SRA]
>SRA1021853
SRR035083.317812
454 Sequencing (SRP001804)
124
41
-
Ser
TGA
[SRA]
>SRA1021885
SRR035083.324145
454 Sequencing (SRP001804)
104
187
+
Ser
TGA
[SRA]
>SRA1021935
SRR035083.329251
454 Sequencing (SRP001804)
135
218
+
Ser
TGA
[SRA]
>SRA1021953
SRR035083.331676
454 Sequencing (SRP001804)
239
156
-
Ser
TGA
[SRA]
>SRA1022037
SRR035083.342775
454 Sequencing (SRP001804)
115
32
-
Ser
TGA
[SRA]
>SRA1022083
SRR035083.349811
454 Sequencing (SRP001804)
14
97
+
Ser
TGA
[SRA]
>SRA1022184
SRR035083.365110
454 Sequencing (SRP001804)
14
97
+
Ser
TGA
[SRA]
>SRA1022230
SRR035083.371262
454 Sequencing (SRP001804)
41
124
+
Ser
TGA
[SRA]
>SRA1022247
SRR035083.374137
454 Sequencing (SRP001804)
155
72
-
Ser
TGA
[SRA]
>SRA1022321
SRR035083.389183
454 Sequencing (SRP001804)
14
97
+
Ser
TGA
[SRA]
>SRA1022504
SRR035083.415272
454 Sequencing (SRP001804)
14
97
+
Ser
TGA
[SRA]
>SRA1022507
SRR035083.415663
454 Sequencing (SRP001804)
124
41
-
Ser
TGA
[SRA]
>SRA1022531
SRR035083.421688
454 Sequencing (SRP001804)
36
119
+
Ser
TGA
[SRA]
>SRA1022563
SRR035083.424735
454 Sequencing (SRP001804)
79
162
+
Ser
TGA
[SRA]
>SRA1022589
SRR035083.429299
454 Sequencing (SRP001804)
128
45
-
Ser
TGA
[SRA]
>SRA1022791
SRR035083.461356
454 Sequencing (SRP001804)
14
97
+
Ser
TGA
[SRA]
>SRA1022867
SRR035083.476091
454 Sequencing (SRP001804)
173
256
+
Ser
TGA
[SRA]
>SRA1022892
SRR035083.480011
454 Sequencing (SRP001804)
36
119
+
Ser
TGA
[SRA]
>SRA1022944
SRR035083.492741
454 Sequencing (SRP001804)
72
155
+
Ser
TGA
[SRA]
>SRA1022973
SRR035083.498861
454 Sequencing (SRP001804)
127
44
-
Ser
TGA
[SRA]
>SRA1026023
SRR035085.128543
454 Sequencing (SRP001806)
163
80
-
Ser
TGA
[SRA]
>SRA1028909
SRR035087.36046
454 Sequencing (SRP001808)
93
10
-
Ser
TGA
[SRA]
>SRA1029881
SRR035087.195688
454 Sequencing (SRP001808)
94
11
-
Ser
TGA
[SRA]
>SRA1031977
SRR035087.524255
454 Sequencing (SRP001808)
356
273
-
Ser
TGA
[SRA]
>SRA1033692
SRR035088.326312
454 Sequencing (SRP001809)
119
202
+
Ser
TGA
[SRA]
>SRA1033916
SRR035088.405934
454 Sequencing (SRP001809)
197
280
+
Ser
TGA
[SRA]
>SRA1035845
SRR035089.387519
454 Sequencing (SRP001810)
395
478
+
Ser
TGA
[SRA]
>SRA1036833
SRR035090.20100
454 Sequencing (SRP001811)
72
155
+
Ser
TGA
[SRA]
>SRA1036871
SRR035090.29678
454 Sequencing (SRP001811)
414
497
+
Ser
TGA
[SRA]
>SRA1037178
SRR035090.88136
454 Sequencing (SRP001811)
61
144
+
Ser
TGA
[SRA]
>SRA1037469
SRR035090.138329
454 Sequencing (SRP001811)
75
158
+
Ser
TGA
[SRA]
>SRA1037492
SRR035090.142333
454 Sequencing (SRP001811)
422
505
+
Ser
TGA
[SRA]
>SRA1037640
SRR035090.166947
454 Sequencing (SRP001811)
69
152
+
Ser
TGA
[SRA]
>SRA1037652
SRR035090.169756
454 Sequencing (SRP001811)
69
152
+
Ser
TGA
[SRA]
>SRA1037815
SRR035090.200872
454 Sequencing (SRP001811)
244
161
-
Ser
TGA
[SRA]
>SRA1038053
SRR035090.239510
454 Sequencing (SRP001811)
71
154
+
Ser
TGA
[SRA]
>SRA1038060
SRR035090.240978
454 Sequencing (SRP001811)
125
42
-
Ser
TGA
[SRA]
>SRA1038213
SRR035090.266097
454 Sequencing (SRP001811)
156
73
-
Ser
TGA
[SRA]
>SRA1038258
SRR035090.275257
454 Sequencing (SRP001811)
147
64
-
Ser
TGA
[SRA]
>SRA1038477
SRR035090.313059
454 Sequencing (SRP001811)
312
395
+
Ser
TGA
[SRA]
>SRA1038596
SRR035090.333358
454 Sequencing (SRP001811)
69
152
+
Ser
TGA
[SRA]
>SRA1038802
SRR035090.369478
454 Sequencing (SRP001811)
291
374
+
Ser
TGA
[SRA]
>SRA1038808
SRR035090.370924
454 Sequencing (SRP001811)
170
253
+
Ser
TGA
[SRA]
>SRA1038858
SRR035090.381487
454 Sequencing (SRP001811)
170
253
+
Ser
TGA
[SRA]
>SRA1038898
SRR035090.390712
454 Sequencing (SRP001811)
55
138
+
Ser
TGA
[SRA]
>SRA1039449
SRR035090.494821
454 Sequencing (SRP001811)
40
123
+
Ser
TGA
[SRA]
>SRA1039456
SRR035090.496129
454 Sequencing (SRP001811)
61
144
+
Ser
TGA
[SRA]
>SRA1039519
SRR035090.507904
454 Sequencing (SRP001811)
10
93
+
Ser
TGA
[SRA]
>SRA1039786
SRR035090.568998
454 Sequencing (SRP001811)
350
433
+
Ser
TGA
[SRA]
>SRA1045644
SRR035093.140663
454 Sequencing (SRP001814)
150
67
-
Ser
TGA
[SRA]
>SRA1050563
SRR035095.293448
454 Sequencing (SRP001816)
193
276
+
Ser
TGA
[SRA]
>SRA1054167
SRR035099.74429
454 Sequencing (SRP001820)
423
340
-
Ser
TGA
[SRA]
>SRA1054198
SRR035099.81380
454 Sequencing (SRP001820)
423
340
-
Ser
TGA
[SRA]
>SRA1054236
SRR035099.90380
454 Sequencing (SRP001820)
152
69
-
Ser
TGA
[SRA]
Identical group No.210159 (4 seq.)
>WENV183812103
PYLN01000026
[PYLN] freshwater metagenome; meromictic lake
457
375
-
Ser
TGA
[ENA]
¢þ
>SRA1021574
SRR035083.275025
454 Sequencing (SRP001804)
372
454
+
Ser
TGA
[SRA]
>SRA1022561
SRR035083.424332
454 Sequencing (SRP001804)
469
551
+
Ser
TGA
[SRA]
>SRA1039089
SRR035090.422621
454 Sequencing (SRP001811)
402
484
+
Ser
TGA
[SRA]
Identical group No.210162 (2 seq.)
>SRA1021093
SRR035083.207235
454 Sequencing (SRP001804)
145
227
+
Ser
TGA
[SRA]
>SRA1039504
SRR035090.505531
454 Sequencing (SRP001811)
127
209
+
Ser
TGA
[SRA]
Identical group No.222859 (3 seq.)
>WENV170611759
FUWD012390141
[FUWD] metagenome; unknown
180
100
-
Ser
TGA
[ENA]
¢þ
>SRA1022489
SRR035083.412852
454 Sequencing (SRP001804)
200
120
-
Ser
TGA
[SRA]
>SRA1049629
SRR035095.107842
454 Sequencing (SRP001816)
275
193
-
Ser
TGA
[SRA]
Identical group No.228202 (1 seq.)
>SRA1022347
SRR035083.392685
454 Sequencing (SRP001804)
92
11
-
Ser
TGA
[SRA]
Identical group No.232362 (1 seq.)
>SRA1022837
SRR035083.469193
454 Sequencing (SRP001804)
76
157
+
Ser
TGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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