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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = ACT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.49636 (5 seq.)
>WENV170627096
FUWD013231401
[FUWD] metagenome; unknown
42123
42036
-
Ser
ACT
[ENA]
¢þ
>WENV170628446
FUWD013246838
[FUWD] metagenome; unknown
42123
42036
-
Ser
ACT
[ENA]
¢þ
>SRA1023900
SRR035084.203751
454 Sequencing (SRP001805)
166
253
+
Ser
ACT
[SRA]
>SRA1046444
SRR035093.308313
454 Sequencing (SRP001814)
227
314
+
Ser
ACT
[SRA]
>SRA1046920
SRR035093.419026
454 Sequencing (SRP001814)
248
161
-
Ser
ACT
[SRA]
Identical group No.49640 (7 seq.)
>WENV170626976
FUWD013230590
[FUWD] metagenome; unknown
8006
7919
-
Ser
ACT
[ENA]
¢þ
>WENV170629311
FUWD013266799
[FUWD] metagenome; unknown
28667
28580
-
Ser
ACT
[ENA]
¢þ
>SRA1023193
SRR035084.33180
454 Sequencing (SRP001805)
225
138
-
Ser
ACT
[SRA]
>SRA1024346
SRR035084.304965
454 Sequencing (SRP001805)
137
224
+
Ser
ACT
[SRA]
>SRA1046853
SRR035093.399289
454 Sequencing (SRP001814)
133
46
-
Ser
ACT
[SRA]
>SRA1047211
SRR035093.483190
454 Sequencing (SRP001814)
176
263
+
Ser
ACT
[SRA]
>SRA1051034
SRR035096.73629
454 Sequencing (SRP001817)
110
23
-
Ser
ACT
[SRA]
Identical group No.61386 (1 seq.)
>SRA1024865
SRR035084.423958
454 Sequencing (SRP001805)
82
171
+
Ser
ACT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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