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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = CCC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.779966 (69 seq.)
>WENV181325899
OFLJ01045001
[OFLJ] seawater metagenome; seawater
87
158
+
Gly
CCC
[ENA]
¢þ
>WENV182540352
OJAH01003894
[OJAH] seawater metagenome; Sea water
577
506
-
Gly
CCC
[ENA]
¢þ
>WENV182540421
OJAJ01000543
[OJAJ] seawater metagenome; Sea water
2623
2694
+
Gly
CCC
[ENA]
¢þ
>WENV182542934
OJAZ01008597
[OJAZ] seawater metagenome; Sea water
436
507
+
Gly
CCC
[ENA]
¢þ
>WENV182543596
OJBB01008385
[OJBB] seawater metagenome; Sea water
586
515
-
Gly
CCC
[ENA]
¢þ
>WENV182544237
OJBF01000039
[OJBF] seawater metagenome; Sea water
6946
7017
+
Gly
CCC
[ENA]
¢þ
>WENV182548445
OJBW01000093
[OJBW] seawater metagenome; Sea water
6831
6902
+
Gly
CCC
[ENA]
¢þ
>WENV182553183
OJCR01000312
[OJCR] seawater metagenome; Sea water
4031
3960
-
Gly
CCC
[ENA]
¢þ
>WENV182554083
OJCT01000812
[OJCT] seawater metagenome; Sea water
134
205
+
Gly
CCC
[ENA]
¢þ
>WENV182557059
OJDI01000612
[OJDI] seawater metagenome; Sea water
1174
1103
-
Gly
CCC
[ENA]
¢þ
>WENV182558568
OJDM01018416
[OJDM] seawater metagenome; Sea water
218
289
+
Gly
CCC
[ENA]
¢þ
>WENV182561565
OJDX01000003
[OJDX] seawater metagenome; Sea water
106333
106262
-
Gly
CCC
[ENA]
¢þ
>WENV182561900
OJDY01000003
[OJDY] seawater metagenome; Sea water
106501
106430
-
Gly
CCC
[ENA]
¢þ
>WENV182562607
OJDZ01020634
[OJDZ] seawater metagenome; Sea water
656
585
-
Gly
CCC
[ENA]
¢þ
>WENV182562664
OJEA01000022
[OJEA] seawater metagenome; Sea water
10272
10201
-
Gly
CCC
[ENA]
¢þ
>WENV182563053
OJEB01000020
[OJEB] seawater metagenome; Sea water
26656
26727
+
Gly
CCC
[ENA]
¢þ
>WENV182564017
OJEE01000003
[OJEE] seawater metagenome; Sea water
26498
26569
+
Gly
CCC
[ENA]
¢þ
>WENV182569022
OJEY01000030
[OJEY] seawater metagenome; Sea water
8334
8263
-
Gly
CCC
[ENA]
¢þ
>WENV182569775
OJFB01000486
[OJFB] seawater metagenome; Sea water
156
227
+
Gly
CCC
[ENA]
¢þ
>WENV182571058
OJFG01000188
[OJFG] seawater metagenome; Sea water
9882
9811
-
Gly
CCC
[ENA]
¢þ
>WENV182574616
OJFS01000132
[OJFS] seawater metagenome; Sea water
10275
10204
-
Gly
CCC
[ENA]
¢þ
>WENV182576685
OJFY01001511
[OJFY] seawater metagenome; Sea water
933
1004
+
Gly
CCC
[ENA]
¢þ
>WENV182577915
OJGM01000011
[OJGM] seawater metagenome; Sea water
24664
24735
+
Gly
CCC
[ENA]
¢þ
>WENV182580628
OJGW01005242
[OJGW] seawater metagenome; Sea water
2973
2902
-
Gly
CCC
[ENA]
¢þ
>WENV182581698
OJGX01045917
[OJGX] seawater metagenome; Sea water
339
268
-
Gly
CCC
[ENA]
¢þ
>WENV182582101
OJHA01000018
[OJHA] seawater metagenome; Sea water
10289
10218
-
Gly
CCC
[ENA]
¢þ
>WENV182582386
OJHB01000019
[OJHB] seawater metagenome; Sea water
15947
15876
-
Gly
CCC
[ENA]
¢þ
>WENV182583073
OJHD01000077
[OJHD] seawater metagenome; Sea water
11041
11112
+
Gly
CCC
[ENA]
¢þ
>WENV182584909
OJHG01026047
[OJHG] seawater metagenome; Sea water
252
323
+
Gly
CCC
[ENA]
¢þ
>WENV182586584
OJHK01001486
[OJHK] seawater metagenome; Sea water
778
849
+
Gly
CCC
[ENA]
¢þ
>WENV182587518
OJHN01000001
[OJHN] seawater metagenome; Sea water
105832
105761
-
Gly
CCC
[ENA]
¢þ
>WENV182592358
OJIR01000084
[OJIR] seawater metagenome; Sea water
26548
26619
+
Gly
CCC
[ENA]
¢þ
>WENV183054537
OLGU01000050
[OLGU] seawater metagenome; Sea water
10272
10201
-
Gly
CCC
[ENA]
¢þ
>WENV183058977
OLHS01000384
[OLHS] seawater metagenome; Sea water
3358
3287
-
Gly
CCC
[ENA]
¢þ
>WENV183059194
OLHU01000003
[OLHU] seawater metagenome; Sea water
26199
26270
+
Gly
CCC
[ENA]
¢þ
>WENV183060178
OLHX01000013
[OLHX] seawater metagenome; Sea water
26687
26758
+
Gly
CCC
[ENA]
¢þ
>WENV183619770
OOFQ01046395
[OOFQ] marine metagenome; seawater
87
158
+
Gly
CCC
[ENA]
¢þ
>WENV170568244
FLMP01024744
[FLMP] seawater metagenome; seawater
157
228
+
Gly
CCC
[ENA]
¢þ
>WENV170570742
FLOH01000020
[FLOH] marine metagenome; water
626163
626090
-
Gly
CCC
[ENA]
¢þ
>WENV170572687
FLOH01001159
[FLOH] marine metagenome; water
16419
16348
-
Gly
CCC
[ENA]
¢þ
>WENV170627227
FUWD013232219
[FUWD] metagenome; unknown
3020
2949
-
Gly
CCC
[ENA]
¢þ
>WENV170627253
FUWD013232409
[FUWD] metagenome; unknown
8107
8036
-
Gly
CCC
[ENA]
¢þ
>WENV170627267
FUWD013232456
[FUWD] metagenome; unknown
7249
7320
+
Gly
CCC
[ENA]
¢þ
>WENV170627316
FUWD013232602
[FUWD] metagenome; unknown
4156
4227
+
Gly
CCC
[ENA]
¢þ
>WENV170633313
FUWD013394310
[FUWD] metagenome; unknown
3020
2949
-
Gly
CCC
[ENA]
¢þ
>WENV170953954
MEHZ011681008
[MEHZ] marine metagenome; marine surface water
26722
26793
+
Gly
CCC
[ENA]
¢þ
>W1911798574
QYRT01000008
Actinomycetota
Subtercola vilae DB165 [QYRT]
63388
63461
+
Gly
CCC
[ENA]
¡û
>W1810657165
QJHB01000007
Actinomycetota
Homoserinimonas sp. OAct 916 [QJHB]
131640
131713
+
Gly
CCC
[ENA]
¡û
>SRA1016795
SRR035082.31852
454 Sequencing (SRP001803)
64
135
+
Gly
CCC
[SRA]
>SRA1023889
SRR035084.200023
454 Sequencing (SRP001805)
408
479
+
Gly
CCC
[SRA]
>SRA1024512
SRR035084.341046
454 Sequencing (SRP001805)
177
106
-
Gly
CCC
[SRA]
>SRA1031717
SRR035087.476533
454 Sequencing (SRP001808)
212
141
-
Gly
CCC
[SRA]
>SRA1036394
SRR035089.509963
454 Sequencing (SRP001810)
278
207
-
Gly
CCC
[SRA]
>SRA1046524
SRR035093.325073
454 Sequencing (SRP001814)
134
63
-
Gly
CCC
[SRA]
>SRA1048928
SRR035094.288649
454 Sequencing (SRP001815)
260
331
+
Gly
CCC
[SRA]
>SRA1050951
SRR035096.58358
454 Sequencing (SRP001817)
50
121
+
Gly
CCC
[SRA]
>SRA1051503
SRR035098.17958
454 Sequencing (SRP001819)
194
265
+
Gly
CCC
[SRA]
>SRA1051693
SRR035098.59614
454 Sequencing (SRP001819)
43
114
+
Gly
CCC
[SRA]
>SRA1051740
SRR035098.67920
454 Sequencing (SRP001819)
194
265
+
Gly
CCC
[SRA]
>SRA1051838
SRR035098.86324
454 Sequencing (SRP001819)
194
265
+
Gly
CCC
[SRA]
>SRA1051847
SRR035098.87823
454 Sequencing (SRP001819)
195
266
+
Gly
CCC
[SRA]
>SRA1052019
SRR035098.124443
454 Sequencing (SRP001819)
196
267
+
Gly
CCC
[SRA]
>SRA1052301
SRR035098.178105
454 Sequencing (SRP001819)
130
59
-
Gly
CCC
[SRA]
>SRA1052542
SRR035098.224684
454 Sequencing (SRP001819)
196
267
+
Gly
CCC
[SRA]
>SRA1053366
SRR035098.392234
454 Sequencing (SRP001819)
215
286
+
Gly
CCC
[SRA]
>SRA1053720
SRR035098.477050
454 Sequencing (SRP001819)
163
92
-
Gly
CCC
[SRA]
>SRA1053735
SRR035098.481551
454 Sequencing (SRP001819)
47
118
+
Gly
CCC
[SRA]
>W1610625666
LIAY01000013
Actinomycetota
Microbacteriaceae bacterium BACL25 MAG-120322-bin65 [LIAY]
2749
2822
+
Gly
CCC
[ENA]
¡û
>W1710756793
LIAY01000013
Actinomycetota
Microbacteriaceae bacterium BACL25 MAG-120322-bin65 [LIAY]
2749
2822
+
Gly
CCC
[ENA]
¡û
Identical group No.788244 (37 seq.)
>WENV180115079
OAPS01117717
[OAPS] marine metagenome; sea water
147
220
+
Gly
CCC
[ENA]
¢þ
>WENV180391346
OBPM01099192
[OBPM] marine metagenome; ENVO:00002010
219
146
-
Gly
CCC
[ENA]
¢þ
>WENV180650307
OCSY01005512
[OCSY] marine metagenome; 30 L Plastic container
532
459
-
Gly
CCC
[ENA]
¢þ
>WENV181323525
OFKY01003664
[OFKY] marine metagenome; sea ice
567
640
+
Gly
CCC
[ENA]
¢þ
>WENV181324161
OFLC01001301
[OFLC] marine metagenome; melt pond
78
5
-
Gly
CCC
[ENA]
¢þ
>WENV181324436
OFLE01010393
[OFLE] marine metagenome; sea ice
137
210
+
Gly
CCC
[ENA]
¢þ
>WENV181324605
OFLF01014059
[OFLF] marine metagenome; melt pond
493
420
-
Gly
CCC
[ENA]
¢þ
>WENV183615365
OOEB01008245
[OOEB] marine metagenome; sea ice
370
443
+
Gly
CCC
[ENA]
¢þ
>WENV183617278
OOEE01145259
[OOEE] marine metagenome; sea ice
76
149
+
Gly
CCC
[ENA]
¢þ
>WENV183617783
OOEG01100020
[OOEG] marine metagenome; sea ice
225
298
+
Gly
CCC
[ENA]
¢þ
>WENV183620915
OOFT01000019
[OOFT] marine metagenome; sea ice
14592
14519
-
Gly
CCC
[ENA]
¢þ
>WENV183621760
OOFU01051287
[OOFU] marine metagenome; sea ice
347
274
-
Gly
CCC
[ENA]
¢þ
>WENV183622932
OOFW01053778
[OOFW] marine metagenome; sea ice
198
271
+
Gly
CCC
[ENA]
¢þ
>WENV170619558
FUWD013016399
[FUWD] metagenome; unknown
299
372
+
Gly
CCC
[ENA]
¢þ
>WENV170619559
FUWD013016415
[FUWD] metagenome; unknown
984
911
-
Gly
CCC
[ENA]
¢þ
>WENV170627183
FUWD013231859
[FUWD] metagenome; unknown
7461
7534
+
Gly
CCC
[ENA]
¢þ
>WENV170627184
FUWD013231860
[FUWD] metagenome; unknown
7472
7545
+
Gly
CCC
[ENA]
¢þ
>WENV170627185
FUWD013231894
[FUWD] metagenome; unknown
1286
1213
-
Gly
CCC
[ENA]
¢þ
>WENV170627664
FUWD013235009
[FUWD] metagenome; unknown
984
911
-
Gly
CCC
[ENA]
¢þ
>WENV170632356
FUWD013380924
[FUWD] metagenome; unknown
7461
7534
+
Gly
CCC
[ENA]
¢þ
>WENV170632357
FUWD013380925
[FUWD] metagenome; unknown
7472
7545
+
Gly
CCC
[ENA]
¢þ
>WENV170632423
FUWD013381741
[FUWD] metagenome; unknown
1286
1213
-
Gly
CCC
[ENA]
¢þ
>SRA1023817
SRR035084.183727
454 Sequencing (SRP001805)
339
266
-
Gly
CCC
[SRA]
>SRA1023988
SRR035084.221656
454 Sequencing (SRP001805)
339
266
-
Gly
CCC
[SRA]
>SRA1024287
SRR035084.292121
454 Sequencing (SRP001805)
318
391
+
Gly
CCC
[SRA]
>SRA1025111
SRR035084.486866
454 Sequencing (SRP001805)
281
208
-
Gly
CCC
[SRA]
>SRA1025254
SRR035084.529643
454 Sequencing (SRP001805)
117
44
-
Gly
CCC
[SRA]
>SRA1028412
SRR035086.320771
454 Sequencing (SRP001807)
299
372
+
Gly
CCC
[SRA]
>SRA1045148
SRR035093.6111
454 Sequencing (SRP001814)
300
373
+
Gly
CCC
[SRA]
>SRA1045455
SRR035093.98166
454 Sequencing (SRP001814)
320
247
-
Gly
CCC
[SRA]
>SRA1045886
SRR035093.189583
454 Sequencing (SRP001814)
282
355
+
Gly
CCC
[SRA]
>SRA1047098
SRR035093.455228
454 Sequencing (SRP001814)
270
343
+
Gly
CCC
[SRA]
>SRA1047130
SRR035093.462623
454 Sequencing (SRP001814)
138
211
+
Gly
CCC
[SRA]
>SRA1054462
SRR035099.137564
454 Sequencing (SRP001820)
96
23
-
Gly
CCC
[SRA]
>W121063456
AJKR01000002
Actinomycetota
Candidatus Aquiluna sp. IMCC13023 [AJKR]
99731
99804
+
Gly
CCC
[ENA]
¡û
>W1610625734
LIBA01000193
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
2011
1938
-
Gly
CCC
[ENA]
¡û
>W1710756861
LIBA01000193
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
2011
1938
-
Gly
CCC
[ENA]
¡û
Identical group No.788280 (10 seq.)
>WENV180377820
OBON01142945
[OBON] marine metagenome; sea water
266
193
-
Gly
CCC
[ENA]
¢þ
>WENV183629955
OOGR01001173
[OOGR] marine metagenome; seawater
1098
1170
+
Gly
CCC
[ENA]
¢þ
>WENV170571808
FLOH01000315
[FLOH] marine metagenome; water
52610
52681
+
Gly
CCC
[ENA]
¢þ
>WENV170572041
FLOH01000483
[FLOH] marine metagenome; water
41459
41532
+
Gly
CCC
[ENA]
¢þ
>WENV170627132
FUWD013231521
[FUWD] metagenome; unknown
3951
3880
-
Gly
CCC
[ENA]
¢þ
>WENV170627392
FUWD013232664
[FUWD] metagenome; unknown
7663
7736
+
Gly
CCC
[ENA]
¢þ
>WENV170630428
FUWD013308359
[FUWD] metagenome; unknown
67785
67714
-
Gly
CCC
[ENA]
¢þ
>SRA1019692
SRR035082.505056
454 Sequencing (SRP001803)
105
34
-
Gly
CCC
[SRA]
>SRA1024683
SRR035084.375966
454 Sequencing (SRP001805)
179
252
+
Gly
CCC
[SRA]
>SRA1046100
SRR035093.237046
454 Sequencing (SRP001814)
186
259
+
Gly
CCC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK