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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = CCT
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118400 (11 seq.)
>WENV170627327
FUWD013232623
[FUWD] metagenome; unknown
153071
152985
-
Arg
CCT
[ENA]
¢þ
>SRA1024911
SRR035084.434255
454 Sequencing (SRP001805)
209
123
-
Arg
CCT
[SRA]
>SRA1045691
SRR035093.148846
454 Sequencing (SRP001814)
245
159
-
Arg
CCT
[SRA]
>SRA1045887
SRR035093.189758
454 Sequencing (SRP001814)
82
168
+
Arg
CCT
[SRA]
>SRA1045893
SRR035093.192567
454 Sequencing (SRP001814)
363
449
+
Arg
CCT
[SRA]
>SRA1046135
SRR035093.243500
454 Sequencing (SRP001814)
24
110
+
Arg
CCT
[SRA]
>SRA1046714
SRR035093.369123
454 Sequencing (SRP001814)
322
236
-
Arg
CCT
[SRA]
>SRA1047095
SRR035093.454056
454 Sequencing (SRP001814)
249
163
-
Arg
CCT
[SRA]
>SRA1047128
SRR035093.462049
454 Sequencing (SRP001814)
3
89
+
Arg
CCT
[SRA]
>SRA1047318
SRR035093.509244
454 Sequencing (SRP001814)
119
33
-
Arg
CCT
[SRA]
>SRA1052316
SRR035098.180103
454 Sequencing (SRP001819)
44
130
+
Arg
CCT
[SRA]
Identical group No.257994 (1 seq.)
>SRA1025018
SRR035084.459983
454 Sequencing (SRP001805)
205
282
+
Arg
CCT
[SRA]
Identical group No.300943 (6 seq.)
>WENV170627380
FUWD013232650
[FUWD] metagenome; unknown
60171
60095
-
Arg
CCT
[ENA]
¢þ
>SRA1023267
SRR035084.57457
454 Sequencing (SRP001805)
134
210
+
Arg
CCT
[SRA]
>SRA1024467
SRR035084.332335
454 Sequencing (SRP001805)
77
153
+
Arg
CCT
[SRA]
>SRA1046711
SRR035093.368363
454 Sequencing (SRP001814)
362
286
-
Arg
CCT
[SRA]
>SRA1046718
SRR035093.369860
454 Sequencing (SRP001814)
85
161
+
Arg
CCT
[SRA]
>SRA1047462
SRR035093.546999
454 Sequencing (SRP001814)
291
367
+
Arg
CCT
[SRA]
Identical group No.381097 (2 seq.)
>SRA1023827
SRR035084.185448
454 Sequencing (SRP001805)
2
78
+
Arg
CCT
[SRA]
>SRA1025366
SRR035084.565806
454 Sequencing (SRP001805)
2
78
+
Arg
CCT
[SRA]
Identical group No.381136 (1 seq.)
>SRA1024906
SRR035084.433813
454 Sequencing (SRP001805)
78
151
+
Arg
CCT
[SRA]
Identical group No.484580 (26 seq.)
>WENV180102711
OAOZ01006935
[OAOZ] marine metagenome; ENVO:00002010
259
186
-
Arg
CCT
[ENA]
¢þ
>WENV180394475
OBPS01008448
[OBPS] marine metagenome; ENVO:00002010 seawater
899
972
+
Arg
CCT
[ENA]
¢þ
>WENV180395561
OBPT01043299
[OBPT] marine metagenome; ENVO:00002010 seawater
446
519
+
Arg
CCT
[ENA]
¢þ
>WENV180399122
OBQG01000353
[OBQG] marine metagenome; ENV:00002010
1655
1582
-
Arg
CCT
[ENA]
¢þ
>WENV180399282
OBQH01000265
[OBQH] marine metagenome; ENV:00002010
1543
1470
-
Arg
CCT
[ENA]
¢þ
>WENV180399478
OBQO01000001
[OBQO] marine metagenome; ENVO:00002010
20189
20262
+
Arg
CCT
[ENA]
¢þ
>WENV181322560
OFKT01001131
[OFKT] marine metagenome; sea ice
1082
1155
+
Arg
CCT
[ENA]
¢þ
>WENV181324500
OFLF01000077
[OFLF] marine metagenome; melt pond
5058
5131
+
Arg
CCT
[ENA]
¢þ
>WENV181385760
OFRK01000934
[OFRK] marine metagenome; sea ice
201
128
-
Arg
CCT
[ENA]
¢þ
>WENV183615278
OOEB01000847
[OOEB] marine metagenome; sea ice
1772
1699
-
Arg
CCT
[ENA]
¢þ
>WENV183620892
OOFT01000008
[OOFT] marine metagenome; sea ice
50194
50121
-
Arg
CCT
[ENA]
¢þ
>WENV183621466
OOFU01001830
[OOFU] marine metagenome; sea ice
303
230
-
Arg
CCT
[ENA]
¢þ
>WENV183624572
OOGD01047505
[OOGD] marine metagenome; sea ice
467
540
+
Arg
CCT
[ENA]
¢þ
>WENV183628710
OOGO01009732
[OOGO] marine metagenome; sea ice
788
861
+
Arg
CCT
[ENA]
¢þ
>WENV170614497
FUWD012834983
[FUWD] metagenome; unknown
662
735
+
Arg
CCT
[ENA]
¢þ
>WENV170627056
FUWD013230986
[FUWD] metagenome; unknown
6116
6189
+
Arg
CCT
[ENA]
¢þ
>WENV170627572
FUWD013233591
[FUWD] metagenome; unknown
6116
6189
+
Arg
CCT
[ENA]
¢þ
>WENV170952052
MEHZ011581855
[MEHZ] marine metagenome; marine surface water
6215
6288
+
Arg
CCT
[ENA]
¢þ
>SRA1023197
SRR035084.35440
454 Sequencing (SRP001805)
390
463
+
Arg
CCT
[SRA]
>SRA1023662
SRR035084.146309
454 Sequencing (SRP001805)
339
266
-
Arg
CCT
[SRA]
>SRA1045179
SRR035093.21470
454 Sequencing (SRP001814)
301
374
+
Arg
CCT
[SRA]
>SRA1047168
SRR035093.474245
454 Sequencing (SRP001814)
98
25
-
Arg
CCT
[SRA]
>SRA1052134
SRR035098.147329
454 Sequencing (SRP001819)
437
364
-
Arg
CCT
[SRA]
>SRA1052463
SRR035098.208353
454 Sequencing (SRP001819)
199
126
-
Arg
CCT
[SRA]
>W121063451
AJKR01000001
Actinomycetota
Candidatus Aquiluna sp. IMCC13023 [AJKR]
166126
166053
-
Arg
CCT
[ENA]
¡û
>WENV076332
AACY024093960
Marine microbial communities from Global Ocean Sampling (GOS)
724
801
+
Arg
CCT
[ENA]
Identical group No.484644 (18 seq.)
>WENV183629945
OOGR01000826
[OOGR] marine metagenome; seawater
460
535
+
Arg
CCT
[ENA]
¢þ
>WENV170572981
FLOH01002039
[FLOH] marine metagenome; water
3299
3374
+
Arg
CCT
[ENA]
¢þ
>WENV170599105
FUWD010062999
[FUWD] metagenome; unknown
447
522
+
Arg
CCT
[ENA]
¢þ
>WENV170601973
FUWD010205756
[FUWD] metagenome; unknown
534
459
-
Arg
CCT
[ENA]
¢þ
>WENV170614907
FUWD012844118
[FUWD] metagenome; unknown
435
510
+
Arg
CCT
[ENA]
¢þ
>WENV170614908
FUWD012844119
[FUWD] metagenome; unknown
135
210
+
Arg
CCT
[ENA]
¢þ
>WENV170619907
FUWD013022717
[FUWD] metagenome; unknown
402
475
+
Arg
CCT
[ENA]
¢þ
>WENV170626789
FUWD013229490
[FUWD] metagenome; unknown
7535
7610
+
Arg
CCT
[ENA]
¢þ
>WENV170627505
FUWD013232971
[FUWD] metagenome; unknown
2892
2967
+
Arg
CCT
[ENA]
¢þ
>WENV170630584
FUWD013314421
[FUWD] metagenome; unknown
13881
13954
+
Arg
CCT
[ENA]
¢þ
>SRA1018885
SRR035082.363237
454 Sequencing (SRP001803)
331
256
-
Arg
CCT
[SRA]
>SRA1023272
SRR035084.58950
454 Sequencing (SRP001805)
415
340
-
Arg
CCT
[SRA]
>SRA1023953
SRR035084.214952
454 Sequencing (SRP001805)
195
270
+
Arg
CCT
[SRA]
>SRA1044582
SRR035092.305542
454 Sequencing (SRP001813)
216
143
-
Arg
CCT
[SRA]
>SRA1045863
SRR035093.183451
454 Sequencing (SRP001814)
46
119
+
Arg
CCT
[SRA]
>SRA1046339
SRR035093.283220
454 Sequencing (SRP001814)
128
53
-
Arg
CCT
[SRA]
>SRA1046694
SRR035093.363893
454 Sequencing (SRP001814)
399
474
+
Arg
CCT
[SRA]
>SRA1047199
SRR035093.480859
454 Sequencing (SRP001814)
200
125
-
Arg
CCT
[SRA]
Identical group No.548322 (4 seq.)
>WENV018981
AACY020523595
Marine microbial communities from Global Ocean Sampling (GOS)
473
548
+
Arg
CCT
[ENA]
>WENV019515
AACY020533581
Marine microbial communities from Global Ocean Sampling (GOS)
703
628
-
Arg
CCT
[ENA]
>WENV170611793
FUWD012399879
[FUWD] metagenome; unknown
83
10
-
Arg
CCT
[ENA]
¢þ
>SRA1024196
SRR035084.270485
454 Sequencing (SRP001805)
107
34
-
Arg
CCT
[SRA]
Identical group No.548650 (4 seq.)
>WENV170620148
FUWD013026569
[FUWD] metagenome; unknown
13116
13189
+
Arg
CCT
[ENA]
¢þ
>WENV170630459
FUWD013308844
[FUWD] metagenome; unknown
10434
10361
-
Arg
CCT
[ENA]
¢þ
>SRA1024126
SRR035084.257095
454 Sequencing (SRP001805)
33
106
+
Arg
CCT
[SRA]
>SRA1024673
SRR035084.373329
454 Sequencing (SRP001805)
33
106
+
Arg
CCT
[SRA]
Identical group No.672712 (6 seq.)
>WENV170622817
FUWD013122036
[FUWD] metagenome; unknown
329
401
+
Arg
CCT
[ENA]
¢þ
>WENV170628595
FUWD013249513
[FUWD] metagenome; unknown
15985
15913
-
Arg
CCT
[ENA]
¢þ
>SRA1023399
SRR035084.89869
454 Sequencing (SRP001805)
284
356
+
Arg
CCT
[SRA]
>SRA1046075
SRR035093.230788
454 Sequencing (SRP001814)
329
401
+
Arg
CCT
[SRA]
>SRA1046600
SRR035093.340656
454 Sequencing (SRP001814)
86
158
+
Arg
CCT
[SRA]
>SRA1047451
SRR035093.544993
454 Sequencing (SRP001814)
222
150
-
Arg
CCT
[SRA]
Identical group No.672747 (4 seq.)
>WENV170627121
FUWD013231492
[FUWD] metagenome; unknown
5893
5819
-
Arg
CCT
[ENA]
¢þ
>WENV170629547
FUWD013273147
[FUWD] metagenome; unknown
10896
10822
-
Arg
CCT
[ENA]
¢þ
>SRA1023520
SRR035084.116261
454 Sequencing (SRP001805)
469
395
-
Arg
CCT
[SRA]
>SRA1046692
SRR035093.363081
454 Sequencing (SRP001814)
90
16
-
Arg
CCT
[SRA]
Identical group No.711308 (4 seq.)
>WENV170620697
FUWD013037109
[FUWD] metagenome; unknown
4385
4459
+
Arg
CCT
[ENA]
¢þ
>WENV170630013
FUWD013289653
[FUWD] metagenome; unknown
8075
8149
+
Arg
CCT
[ENA]
¢þ
>SRA1024733
SRR035084.389622
454 Sequencing (SRP001805)
111
185
+
Arg
CCT
[SRA]
>SRA1025150
SRR035084.499173
454 Sequencing (SRP001805)
111
185
+
Arg
CCT
[SRA]
Identical group No.711323 (3 seq.)
>WENV170620942
FUWD013043987
[FUWD] metagenome; unknown
4090
4016
-
Arg
CCT
[ENA]
¢þ
>WENV170629098
FUWD013260943
[FUWD] metagenome; unknown
531
605
+
Arg
CCT
[ENA]
¢þ
>SRA1024041
SRR035084.235764
454 Sequencing (SRP001805)
507
433
-
Arg
CCT
[SRA]
Identical group No.711554 (5 seq.)
>WENV170626688
FUWD013228713
[FUWD] metagenome; unknown
1039
1111
+
Arg
CCT
[ENA]
¢þ
>SRA1023473
SRR035084.106146
454 Sequencing (SRP001805)
60
132
+
Arg
CCT
[SRA]
>SRA1024772
SRR035084.397798
454 Sequencing (SRP001805)
63
135
+
Arg
CCT
[SRA]
>SRA1051791
SRR035098.77166
454 Sequencing (SRP001819)
222
150
-
Arg
CCT
[SRA]
>SRA1053676
SRR035098.464795
454 Sequencing (SRP001819)
241
313
+
Arg
CCT
[SRA]
Identical group No.726899 (1 seq.)
>SRA1023981
SRR035084.220737
454 Sequencing (SRP001805)
248
322
+
Arg
CCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK