tRNA genes clustered and arranged according to each identical group

454 Sequencing (SRP001805)

Anticodon = CGC

HIT: 2 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.458396 (77 seq.)
>W1710874089 LMNH01000006 Actinomycetota Nocardioides sp. Leaf285 [LMNH] 24559 24634 + Ala CGC [ENA] ¡û
>W1710874874 LMNY01000002 Actinomycetota Nocardioides sp. Leaf307 [LMNY] 1190464 1190389 - Ala CGC [ENA] ¡û
>W1710879970 LMSA01000001 Actinomycetota Knoellia sp. Soil729 [LMSA] 886776 886701 - Ala CGC [ENA] ¡û
>W1710880976 LMSS01000003 Actinomycetota Phycicoccus sp. Soil802 [LMSS] 530645 530718 + Ala CGC [ENA] ¡û
>W1710881008 LMST01000001 Actinomycetota Phycicoccus sp. Soil803 [LMST] 827421 827496 + Ala CGC [ENA] ¡û
>W1710881220 LMSX01000009 Actinomycetota Terrabacter sp. Soil811 [LMSX] 47166 47239 + Ala CGC [ENA] ¡û
>W1711137999 LVCF01000004 Actinomycetota Branchiibius sp. NY16-3462-2 [LVCF] 63197 63272 + Ala CGC [ENA] ¡û
>W1711491988 MKKA01000011 Actinomycetota Ornithinimicrobium sp. CNJ-824 [MKKA] 297598 297523 - Ala CGC [ENA] ¡û
>W131155919 AQOZ01000019 Actinomycetota Nocardioides sp. Iso805N [AQOZ] 130903 130978 + Ala CGC [ENA] ¡û
>W131217048 ATWJ01000012 Actinomycetota Ornithinimicrobium pekingense DSM 21552 [ATWJ] 300669 300594 - Ala CGC [ENA] ¡û
>W131227579 AUFG01000022 Actinomycetota Arsenicicoccus bolidensis DSM 15745 [AUFG] 22741 22666 - Ala CGC [ENA] ¡û
>w012505 AAMN01000004 Actinomycetota Janibacter sp. HTCC2649 [AAMN] 13087 13164 + Ala CGC [ENA] ¡û
>WENV180098586 MTBK01255882 [MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge 206 281 + Ala CGC [ENA] ¢þ
>WENV180209244 OBAK01047786 [OBAK] marine metagenome; ENVO.00002150 108 183 + Ala CGC [ENA] ¢þ
>WENV180363926 OBNZ01026382 [OBNZ] marine metagenome; ENVO:00002010 565 492 - Ala CGC [ENA] ¢þ
>WENV181163259 OEIO01171284 [OEIO] marine metagenome; sea ice 268 341 + Ala CGC [ENA] ¢þ
>WENV181189837 OEOF01255228 [OEOF] activated sludge metagenome; Activated Sludge 192 118 - Ala CGC [ENA] ¢þ
>WENV181309633 OFIW01017677 [OFIW] marine metagenome; seawater 286 359 + Ala CGC [ENA] ¢þ
>WENV181314031 OFJI01010338 [OFJI] marine metagenome; sea ice 471 398 - Ala CGC [ENA] ¢þ
>WENV181371666 OFQV01038799 [OFQV] wastewater metagenome; WWTP Cannobio (Effluent) 211 136 - Ala CGC [ENA] ¢þ
>WENV181391568 OFRT01023363 [OFRT] seawater metagenome; seawater 419 346 - Ala CGC [ENA] ¢þ
>WENV181392925 OFRX01017585 [OFRX] seawater metagenome; seawater 764 837 + Ala CGC [ENA] ¢þ
>W141242917 CAIZ01000134 Actinomycetota Phycicoccus elongatus Lp2 [CAIZ] 11501 11426 - Ala CGC [ENA] ¡û
>W141243081 CAJC01000209 Actinomycetota Tetrasphaera jenkinsii Ben 74 [CAJC] 1657 1730 + Ala CGC [ENA] ¡û
>WENV183619068 OOFP01023215 [OOFP] marine metagenome; seawater 419 346 - Ala CGC [ENA] ¢þ
>WENV183629294 OOGP01017720 [OOGP] marine metagenome; seawater 764 837 + Ala CGC [ENA] ¢þ
>WENV183629990 OOGR01002528 [OOGR] marine metagenome; seawater 800 873 + Ala CGC [ENA] ¢þ
>WENV183631178 OOGU01045315 [OOGU] marine metagenome; sea ice 254 181 - Ala CGC [ENA] ¢þ
>WENV183678099 ORJL011837076 [ORJL] groundwater metagenome; groundwater 135 61 - Ala CGC [ENA] ¢þ
>WENV170011466 APMI01067364 [APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater 492 567 + Ala CGC [ENA] ¢þ
>WENV170011744 APMI01087326 [APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater 2396 2321 - Ala CGC [ENA] ¢þ
>WENV170552070 CXWJ01036985 [CXWJ] wastewater metagenome; activated sludge 980 1055 + Ala CGC [ENA] ¢þ
>WENV170553898 CXWK01036890 [CXWK] wastewater metagenome; activated sludge 2721 2646 - Ala CGC [ENA] ¢þ
>WENV170568582 FLMP01052746 [FLMP] seawater metagenome; seawater 519 446 - Ala CGC [ENA] ¢þ
>WENV170570997 FLOH01000049 [FLOH] marine metagenome; water 56323 56248 - Ala CGC [ENA] ¢þ
>WENV170572212 FLOH01000624 [FLOH] marine metagenome; water 23490 23563 + Ala CGC [ENA] ¢þ
>WENV170604036 FUWD010355565 [FUWD] metagenome; unknown 503 576 + Ala CGC [ENA] ¢þ
>WENV170620698 FUWD013037114 [FUWD] metagenome; unknown 4636 4561 - Ala CGC [ENA] ¢þ
>WENV170626818 FUWD013229707 [FUWD] metagenome; unknown 2328 2255 - Ala CGC [ENA] ¢þ
>WENV170626823 FUWD013229727 [FUWD] metagenome; unknown 14777 14704 - Ala CGC [ENA] ¢þ
>WENV170950521 MEHZ011501554 [MEHZ] marine metagenome; marine surface water 150 223 + Ala CGC [ENA] ¢þ
>C181197163 CP031229 Actinomycetota Ornithinimicrobium avium AMA3305 [CP031229] 3295262 3295337 + Ala CGC - ¡û
>C191150896 CP036403 Actinomycetota Ornithinimicrobium sp. HY006 [CP036403] 579548 579623 + Ala CGC - ¡û
>C191158365 CP038213 Actinomycetota Ornithinimicrobium flavum CPCC 203535 [CP038213] 654425 654498 + Ala CGC - ¡û
>C191186692 CP041091 Actinomycetota Nocardioides sambongensis KUDC 5002 [CP041091] 4133674 4133749 + Ala CGC - ¡û
>W1911495838 OBQK01000002 Actinomycetota Ornithinimicrobium cerasi USBA17B2 [OBQK] 353017 352942 - Ala CGC [ENA] ¡û
>W1911533118 OKQN01000007 Actinomycetota Janibacter massiliensis Marseille-P4121 [OKQN] 282832 282906 + Ala CGC [ENA] ¡û
>W1911817412 QZMN01000003 Actinomycetota Ornithinimicrobium cerasi CPCC 203383 [QZMN] 146021 146096 + Ala CGC [ENA] ¡û
>W1810364573 PVTI01000027 Actinomycetota Knoellia remsis ATCC BAA-1496 [PVTI] 46856 46930 + Ala CGC [ENA] ¡û
>W1810594934 QGDN01000001 Actinomycetota Branchiibius hedensis DSM 22951 [QGDN] 2599697 2599622 - Ala CGC [ENA] ¡û
>SRA1023718 SRR035084.160050 454 Sequencing (SRP001805) 110 37 - Ala CGC [SRA]
>SRA1024268 SRR035084.288110 454 Sequencing (SRP001805) 84 159 + Ala CGC [SRA]
>SRA1024280 SRR035084.291525 454 Sequencing (SRP001805) 306 233 - Ala CGC [SRA]
>C151090483 CP012070 Actinomycetota Arsenicicoccus sp. oral taxon 190 F0371 [CP012070] 154309 154234 - Ala CGC - ¡û
>SRA1046915 SRR035093.418173 454 Sequencing (SRP001814) 232 305 + Ala CGC [SRA]
>SRA1047376 SRR035093.526786 454 Sequencing (SRP001814) 232 305 + Ala CGC [SRA]
>W11125308 ADVI01000094 Actinomycetota Nocardioidaceae bacterium Broad-1 [ADVI] 175894 175819 - Ala CGC [ENA] ¡û
>W1511540030 JZDQ01000004 Actinomycetota Nocardioides luteus BAFB [JZDQ] 77960 78035 + Ala CGC [ENA] ¡û
>W11155969 AFAQ01001944 Actinomycetota Rhodococcus sp. R04 [AFAQ] 378 453 + Ala CGC [ENA] ¡û
>W1610027085 AVPI01000034 Actinomycetota Knoellia flava TL1 [AVPI] 73193 73118 - Ala CGC [ENA] ¡û
>W1610027137 AVPJ01000021 Actinomycetota Knoellia sinensis KCTC 19936 [AVPJ] 21658 21585 - Ala CGC [ENA] ¡û
>W1610027179 AVPK01000010 Actinomycetota Knoellia subterranea KCTC 19937 [AVPK] 82548 82473 - Ala CGC [ENA] ¡û
>W1610736435 LMNH01000006 Actinomycetota Nocardioides sp. Leaf285 [LMNH] 24559 24634 + Ala CGC [ENA] ¡û
>W1610737220 LMNY01000002 Actinomycetota Nocardioides sp. Leaf307 [LMNY] 1190464 1190389 - Ala CGC [ENA] ¡û
>W1610742316 LMSA01000001 Actinomycetota Knoellia sp. Soil729 [LMSA] 886776 886701 - Ala CGC [ENA] ¡û
>W1610743322 LMSS01000003 Actinomycetota Phycicoccus sp. Soil802 [LMSS] 530645 530718 + Ala CGC [ENA] ¡û
>W1610743354 LMST01000001 Actinomycetota Phycicoccus sp. Soil803 [LMST] 827421 827496 + Ala CGC [ENA] ¡û
>W1610743566 LMSX01000009 Actinomycetota Terrabacter sp. Soil811 [LMSX] 47166 47239 + Ala CGC [ENA] ¡û
>W1610949085 LVCF01000004 Actinomycetota Branchiibius sp. NY16-3462-2 [LVCF] 63197 63272 + Ala CGC [ENA] ¡û
>W1710023250 AVPI01000034 Actinomycetota Knoellia flava TL1 [AVPI] 73193 73118 - Ala CGC [ENA] ¡û
>W1710023302 AVPJ01000021 Actinomycetota Knoellia sinensis KCTC 19936 [AVPJ] 21658 21585 - Ala CGC [ENA] ¡û
>W1710023344 AVPK01000010 Actinomycetota Knoellia subterranea KCTC 19937 [AVPK] 82548 82473 - Ala CGC [ENA] ¡û
>W1710506066 FMUH01000001 Actinomycetota Klenkia marina DSM 45722 [FMUH] 383808 383733 - Ala CGC [ENA] ¡û
>W1710515948 FNCF01000001 Actinomycetota Klenkia brasiliensis [FNCF] 223466 223391 - Ala CGC [ENA] ¡û
>W1710520327 FNFN01000002 Actinomycetota Nocardioides sp. YR527 [FNFN] 36014 35939 - Ala CGC [ENA] ¡û
>W1710524364 FNIR01000005 Actinomycetota Klenkia soli [FNIR] 171030 170955 - Ala CGC [ENA] ¡û
>W1710558766 FOMD01000002 Actinomycetota Klenkia taihuensis [FOMD] 225075 225000 - Ala CGC [ENA] ¡û
Identical group No.484656 (9 seq.)
>WENV180361961 OBNW01014311 [OBNW] marine metagenome; ENVO:00002010, 'SEA WATER 226 153 - Ala CGC [ENA] ¢þ
>WENV180391761 OBPN01039235 [OBPN] marine metagenome; seawater 224 151 - Ala CGC [ENA] ¢þ
>WENV170626727 FUWD013229117 [FUWD] metagenome; unknown 13457 13382 - Ala CGC [ENA] ¢þ
>WENV170629410 FUWD013269716 [FUWD] metagenome; unknown 16497 16422 - Ala CGC [ENA] ¢þ
>SRA1024028 SRR035084.233560 454 Sequencing (SRP001805) 480 405 - Ala CGC [SRA]
>SRA1024055 SRR035084.238269 454 Sequencing (SRP001805) 202 277 + Ala CGC [SRA]
>SRA1046034 SRR035093.220917 454 Sequencing (SRP001814) 289 364 + Ala CGC [SRA]
>SRA1046926 SRR035093.419879 454 Sequencing (SRP001814) 133 58 - Ala CGC [SRA]
>SRA1053298 SRR035098.377159 454 Sequencing (SRP001819) 232 157 - Ala CGC [SRA]
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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