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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = GCG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.358640 (5 seq.)
>WENV170620522
FUWD013033109
[FUWD] metagenome; unknown
4475
4399
-
Arg
GCG
[ENA]
¢þ
>WENV170628664
FUWD013250555
[FUWD] metagenome; unknown
2060
2136
+
Arg
GCG
[ENA]
¢þ
>SRA1023591
SRR035084.133132
454 Sequencing (SRP001805)
136
212
+
Arg
GCG
[SRA]
>SRA1023768
SRR035084.170986
454 Sequencing (SRP001805)
209
133
-
Arg
GCG
[SRA]
>SRA1023990
SRR035084.222724
454 Sequencing (SRP001805)
209
133
-
Arg
GCG
[SRA]
Identical group No.711303 (3 seq.)
>WENV170620345
FUWD013030008
[FUWD] metagenome; unknown
926
854
-
Arg
GCG
[ENA]
¢þ
>WENV170629225
FUWD013264554
[FUWD] metagenome; unknown
12242
12170
-
Arg
GCG
[ENA]
¢þ
>SRA1023400
SRR035084.90296
454 Sequencing (SRP001805)
116
44
-
Arg
GCG
[SRA]
Identical group No.711358 (3 seq.)
>WENV170621644
FUWD013066965
[FUWD] metagenome; unknown
1876
1802
-
Arg
GCG
[ENA]
¢þ
>WENV170629552
FUWD013273205
[FUWD] metagenome; unknown
5504
5578
+
Arg
GCG
[ENA]
¢þ
>SRA1023806
SRR035084.180182
454 Sequencing (SRP001805)
123
197
+
Arg
GCG
[SRA]
Identical group No.726936 (1 seq.)
>SRA1025386
SRR035084.575770
454 Sequencing (SRP001805)
170
96
-
Arg
GCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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