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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = ACG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.177359 (1 seq.)
>SRA1025909
SRR035085.106993
454 Sequencing (SRP001806)
129
53
-
Arg
ACG
[SRA]
Identical group No.177401 (1 seq.)
>SRA1026216
SRR035085.164754
454 Sequencing (SRP001806)
373
297
-
Arg
ACG
[SRA]
Identical group No.177445 (1 seq.)
>SRA1026496
SRR035085.216435
454 Sequencing (SRP001806)
125
199
+
Arg
ACG
[SRA]
Identical group No.177469 (1 seq.)
>SRA1026631
SRR035085.245736
454 Sequencing (SRP001806)
360
285
-
Arg
ACG
[SRA]
Identical group No.400005 (1 seq.)
>SRA1025969
SRR035085.119443
454 Sequencing (SRP001806)
309
236
-
Arg
ACG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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