This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = ACG
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272235 (2 seq.)
>WENV170611818
FUWD012407540
[FUWD] metagenome; unknown
73
148
+
Arg
ACG
[ENA]
¢þ
>SRA1025439
SRR035085.5345
454 Sequencing (SRP001806)
82
157
+
Arg
ACG
[SRA]
Identical group No.272239 (3 seq.)
>SRA1025459
SRR035085.13697
454 Sequencing (SRP001806)
20
96
+
Arg
ACG
[SRA]
>SRA1040873
SRR035091.162258
454 Sequencing (SRP001812)
246
170
-
Arg
ACG
[SRA]
>WENV058558
AACY023333647
Marine microbial communities from Global Ocean Sampling (GOS)
684
762
+
Arg
ACG
[ENA]
Identical group No.272254 (9 seq.)
>WENV170625691
FUWD013203496
[FUWD] metagenome; unknown
1188
1263
+
Arg
ACG
[ENA]
¢þ
>WENV170625692
FUWD013203497
[FUWD] metagenome; unknown
1
76
+
Arg
ACG
[ENA]
¢þ
>WENV170633913
FUWD013405504
[FUWD] metagenome; unknown
1188
1263
+
Arg
ACG
[ENA]
¢þ
>WENV170633914
FUWD013405505
[FUWD] metagenome; unknown
1
76
+
Arg
ACG
[ENA]
¢þ
>SRA1025523
SRR035085.33500
454 Sequencing (SRP001806)
316
391
+
Arg
ACG
[SRA]
>SRA1033290
SRR035088.216147
454 Sequencing (SRP001809)
82
7
-
Arg
ACG
[SRA]
>SRA1033757
SRR035088.346685
454 Sequencing (SRP001809)
198
273
+
Arg
ACG
[SRA]
>SRA1033870
SRR035088.385693
454 Sequencing (SRP001809)
244
319
+
Arg
ACG
[SRA]
>SRA1054772
SRR035099.209254
454 Sequencing (SRP001820)
11
86
+
Arg
ACG
[SRA]
Identical group No.272328 (1 seq.)
>SRA1025909
SRR035085.106993
454 Sequencing (SRP001806)
129
53
-
Arg
ACG
[SRA]
Identical group No.272346 (3 seq.)
>WENV170611859
FUWD012421507
[FUWD] metagenome; unknown
243
167
-
Arg
ACG
[ENA]
¢þ
>SRA1026034
SRR035085.131020
454 Sequencing (SRP001806)
253
177
-
Arg
ACG
[SRA]
>SRA1026303
SRR035085.182202
454 Sequencing (SRP001806)
253
177
-
Arg
ACG
[SRA]
Identical group No.272347 (23 seq.)
>W131157568
AQSK01000209
Unclassified
Cloacimonetes bacterium SCGC AAA252-E13 KSB1 bacterium SCGC AAA252-E13 [AQSK]
10265
10339
+
Arg
ACG
[ENA]
¡û
>W131157668
AQSO01000118
Unclassified
Cloacimonetes bacterium SCGC AAA252-D03 KSB1 bacterium SCGC AAA252-D03 [AQSO]
14109
14185
+
Arg
ACG
[ENA]
¡û
>W131192931
ASNH01000006
Unclassified
Cloacimonetes bacterium SCGC AAA255-C20 KSB1 bacterium SCGC AAA255-C20 [ASNH]
10384
10458
+
Arg
ACG
[ENA]
¡û
>W131193045
ASNL01000026
Unclassified
Cloacimonetes bacterium SCGC AAA252-P14 KSB1 bacterium SCGC AAA252-P14 [ASNL]
395
319
-
Arg
ACG
[ENA]
¡û
>W131193085
ASNN01000044
Unclassified
Cloacimonetes bacterium SCGC AAA252-I11 KSB1 bacterium SCGC AAA252-I11 [ASNN]
486
412
-
Arg
ACG
[ENA]
¡û
>W131193205
ASNT01000044
Unclassified
Cloacimonetes bacterium SCGC AAA252-P10 KSB1 bacterium SCGC AAA252-P10 [ASNT]
334
260
-
Arg
ACG
[ENA]
¡û
>W141139706
AWNX01000104
Unclassified
Cloacimonetes bacterium JGI OTU-1 [AWNX]
10183
10257
+
Arg
ACG
[ENA]
¡û
>W141139732
AWNY01000062
Unclassified
Cloacimonetes bacterium JGI OTU-2 [AWNY]
14109
14185
+
Arg
ACG
[ENA]
¡û
>WENV170620846
FUWD013041101
[FUWD] metagenome; unknown
1073
999
-
Arg
ACG
[ENA]
¢þ
>WENV170625885
FUWD013208279
[FUWD] metagenome; unknown
2461
2387
-
Arg
ACG
[ENA]
¢þ
>WENV170625887
FUWD013208280
[FUWD] metagenome; unknown
140
66
-
Arg
ACG
[ENA]
¢þ
>WENV170629000
FUWD013258175
[FUWD] metagenome; unknown
1073
999
-
Arg
ACG
[ENA]
¢þ
>WENV170634102
FUWD013409898
[FUWD] metagenome; unknown
2461
2387
-
Arg
ACG
[ENA]
¢þ
>WENV170634104
FUWD013409899
[FUWD] metagenome; unknown
140
66
-
Arg
ACG
[ENA]
¢þ
>SRA1026044
SRR035085.132075
454 Sequencing (SRP001806)
296
222
-
Arg
ACG
[SRA]
>SRA1030083
SRR035087.225531
454 Sequencing (SRP001808)
60
134
+
Arg
ACG
[SRA]
>SRA1031204
SRR035087.390745
454 Sequencing (SRP001808)
275
349
+
Arg
ACG
[SRA]
>SRA1031220
SRR035087.394066
454 Sequencing (SRP001808)
52
126
+
Arg
ACG
[SRA]
>SRA1031696
SRR035087.473366
454 Sequencing (SRP001808)
52
126
+
Arg
ACG
[SRA]
>SRA1032397
SRR035087.621803
454 Sequencing (SRP001808)
104
30
-
Arg
ACG
[SRA]
>SRA1047639
SRR035094.3539
454 Sequencing (SRP001815)
441
367
-
Arg
ACG
[SRA]
>SRA1047775
SRR035094.39415
454 Sequencing (SRP001815)
155
229
+
Arg
ACG
[SRA]
>SRA1048183
SRR035094.123771
454 Sequencing (SRP001815)
415
489
+
Arg
ACG
[SRA]
Identical group No.272372 (1 seq.)
>SRA1026216
SRR035085.164754
454 Sequencing (SRP001806)
373
297
-
Arg
ACG
[SRA]
Identical group No.272416 (18 seq.)
>WENV170619691
FUWD013019112
[FUWD] metagenome; unknown
374
450
+
Arg
ACG
[ENA]
¢þ
>WENV170624189
FUWD013177245
[FUWD] metagenome; unknown
2472
2396
-
Arg
ACG
[ENA]
¢þ
>WENV170632472
FUWD013383051
[FUWD] metagenome; unknown
2472
2396
-
Arg
ACG
[ENA]
¢þ
>SRA1026479
SRR035085.213791
454 Sequencing (SRP001806)
270
194
-
Arg
ACG
[SRA]
>SRA1031634
SRR035087.462537
454 Sequencing (SRP001808)
219
295
+
Arg
ACG
[SRA]
>SRA1032315
SRR035087.601878
454 Sequencing (SRP001808)
137
213
+
Arg
ACG
[SRA]
>SRA1032624
SRR035088.66172
454 Sequencing (SRP001809)
68
144
+
Arg
ACG
[SRA]
>SRA1036082
SRR035089.440373
454 Sequencing (SRP001810)
111
187
+
Arg
ACG
[SRA]
>SRA1036146
SRR035089.455306
454 Sequencing (SRP001810)
100
176
+
Arg
ACG
[SRA]
>SRA1036267
SRR035089.483055
454 Sequencing (SRP001810)
139
63
-
Arg
ACG
[SRA]
>SRA1036757
SRR035089.607301
454 Sequencing (SRP001810)
231
307
+
Arg
ACG
[SRA]
>SRA1047813
SRR035094.46139
454 Sequencing (SRP001815)
101
25
-
Arg
ACG
[SRA]
>SRA1048042
SRR035094.96920
454 Sequencing (SRP001815)
149
225
+
Arg
ACG
[SRA]
>SRA1049171
SRR035095.32338
454 Sequencing (SRP001816)
28
104
+
Arg
ACG
[SRA]
>SRA1049229
SRR035095.41406
454 Sequencing (SRP001816)
414
338
-
Arg
ACG
[SRA]
>SRA1049816
SRR035095.141930
454 Sequencing (SRP001816)
257
333
+
Arg
ACG
[SRA]
>SRA1049939
SRR035095.163281
454 Sequencing (SRP001816)
286
210
-
Arg
ACG
[SRA]
>SRA1050062
SRR035095.185315
454 Sequencing (SRP001816)
219
143
-
Arg
ACG
[SRA]
Identical group No.272422 (1 seq.)
>SRA1026496
SRR035085.216435
454 Sequencing (SRP001806)
125
199
+
Arg
ACG
[SRA]
Identical group No.272447 (1 seq.)
>SRA1026631
SRR035085.245736
454 Sequencing (SRP001806)
360
285
-
Arg
ACG
[SRA]
Identical group No.272482 (1 seq.)
>SRA1026783
SRR035085.290450
454 Sequencing (SRP001806)
188
264
+
Arg
ACG
[SRA]
Identical group No.453290 (2 seq.)
>SRA1025820
SRR035085.88981
454 Sequencing (SRP001806)
243
168
-
Arg
ACG
[SRA]
>SRA1026740
SRR035085.277551
454 Sequencing (SRP001806)
244
169
-
Arg
ACG
[SRA]
Identical group No.654244 (1 seq.)
>SRA1025563
SRR035085.39739
454 Sequencing (SRP001806)
347
421
+
Arg
ACG
[SRA]
Identical group No.654658 (1 seq.)
>SRA1025969
SRR035085.119443
454 Sequencing (SRP001806)
309
236
-
Arg
ACG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK