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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = CAA
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.87025 (1 seq.)
>SRA1025779
SRR035085.81594
454 Sequencing (SRP001806)
313
229
-
Leu
CAA
[SRA]
Identical group No.87035 (1 seq.)
>SRA1026175
SRR035085.157891
454 Sequencing (SRP001806)
76
163
+
Leu
CAA
[SRA]
Identical group No.112542 (2 seq.)
>SRA1026307
SRR035085.183049
454 Sequencing (SRP001806)
244
330
+
Leu
CAA
[SRA]
>SRA1026601
SRR035085.237665
454 Sequencing (SRP001806)
243
329
+
Leu
CAA
[SRA]
Identical group No.112548 (1 seq.)
>SRA1026580
SRR035085.232569
454 Sequencing (SRP001806)
371
455
+
Leu
CAA
[SRA]
Identical group No.112551 (1 seq.)
>SRA1026643
SRR035085.247717
454 Sequencing (SRP001806)
77
162
+
Leu
CAA
[SRA]
Identical group No.153844 (1 seq.)
>SRA1025644
SRR035085.55528
454 Sequencing (SRP001806)
113
31
-
Leu
CAA
[SRA]
Identical group No.153847 (1 seq.)
>SRA1025769
SRR035085.80118
454 Sequencing (SRP001806)
240
325
+
Leu
CAA
[SRA]
Identical group No.153849 (1 seq.)
>SRA1025810
SRR035085.87490
454 Sequencing (SRP001806)
269
352
+
Leu
CAA
[SRA]
Identical group No.153864 (1 seq.)
>SRA1026498
SRR035085.217034
454 Sequencing (SRP001806)
157
242
+
Leu
CAA
[SRA]
Identical group No.180219 (1 seq.)
>SRA1026657
SRR035085.251280
454 Sequencing (SRP001806)
265
349
+
Leu
CAA
[SRA]
Identical group No.272260 (1 seq.)
>SRA1025533
SRR035085.34839
454 Sequencing (SRP001806)
200
276
+
Leu
CAA
[SRA]
Identical group No.453413 (1 seq.)
>SRA1026584
SRR035085.233255
454 Sequencing (SRP001806)
244
172
-
Leu
CAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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