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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = CAC
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240831 (1 seq.)
>SRA1026592
SRR035085.234580
454 Sequencing (SRP001806)
241
318
+
Val
CAC
[SRA]
Identical group No.272274 (1 seq.)
>SRA1025612
SRR035085.49668
454 Sequencing (SRP001806)
273
200
-
Val
CAC
[SRA]
Identical group No.272348 (1 seq.)
>SRA1026045
SRR035085.132102
454 Sequencing (SRP001806)
150
77
-
Val
CAC
[SRA]
Identical group No.272380 (1 seq.)
>SRA1026256
SRR035085.173021
454 Sequencing (SRP001806)
109
183
+
Val
CAC
[SRA]
Identical group No.272423 (1 seq.)
>SRA1026497
SRR035085.216785
454 Sequencing (SRP001806)
316
243
-
Val
CAC
[SRA]
Identical group No.272450 (1 seq.)
>SRA1026646
SRR035085.249047
454 Sequencing (SRP001806)
50
126
+
Val
CAC
[SRA]
Identical group No.272476 (1 seq.)
>SRA1026750
SRR035085.280131
454 Sequencing (SRP001806)
389
465
+
Val
CAC
[SRA]
Identical group No.453196 (1 seq.)
>SRA1025436
SRR035085.3868
454 Sequencing (SRP001806)
191
118
-
Val
CAC
[SRA]
Identical group No.453213 (1 seq.)
>SRA1025487
SRR035085.23210
454 Sequencing (SRP001806)
199
274
+
Val
CAC
[SRA]
Identical group No.453263 (1 seq.)
>SRA1025695
SRR035085.67855
454 Sequencing (SRP001806)
170
96
-
Val
CAC
[SRA]
Identical group No.453424 (1 seq.)
>SRA1026639
SRR035085.246541
454 Sequencing (SRP001806)
258
333
+
Val
CAC
[SRA]
Identical group No.654381 (1 seq.)
>SRA1026541
SRR035085.224684
454 Sequencing (SRP001806)
208
279
+
Val
CAC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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