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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = CAG
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30409 (1 seq.)
>SRA1026247
SRR035085.170723
454 Sequencing (SRP001806)
151
238
+
Leu
CAG
[SRA]
Identical group No.72763 (1 seq.)
>SRA1025949
SRR035085.115135
454 Sequencing (SRP001806)
10
95
+
Leu
CAG
[SRA]
Identical group No.72770 (2 seq.)
>SRA1026272
SRR035085.176999
454 Sequencing (SRP001806)
231
146
-
Leu
CAG
[SRA]
>SRA1026624
SRR035085.244038
454 Sequencing (SRP001806)
231
146
-
Leu
CAG
[SRA]
Identical group No.112516 (1 seq.)
>SRA1025583
SRR035085.41196
454 Sequencing (SRP001806)
13
99
+
Leu
CAG
[SRA]
Identical group No.112534 (1 seq.)
>SRA1026084
SRR035085.140649
454 Sequencing (SRP001806)
119
205
+
Leu
CAG
[SRA]
Identical group No.112536 (1 seq.)
>SRA1026182
SRR035085.160063
454 Sequencing (SRP001806)
422
336
-
Leu
CAG
[SRA]
Identical group No.153848 (1 seq.)
>SRA1025775
SRR035085.80724
454 Sequencing (SRP001806)
112
197
+
Leu
CAG
[SRA]
Identical group No.153927 (1 seq.)
>SRA1026407
SRR035085.202846
454 Sequencing (SRP001806)
137
219
+
Leu
CAG
[SRA]
Identical group No.218061 (1 seq.)
>SRA1025691
SRR035085.67682
454 Sequencing (SRP001806)
342
423
+
Leu
CAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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