This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = CAT
HIT:
19 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.150277 (2 seq.)
>SRA1025734
SRR035085.72645
454 Sequencing (SRP001806)
130
209
+
Met
CAT
[SRA]
>SRA1025755
SRR035085.77652
454 Sequencing (SRP001806)
130
209
+
Met
CAT
[SRA]
Identical group No.155898 (1 seq.)
>SRA1025450
SRR035085.9356
454 Sequencing (SRP001806)
341
418
+
Met
CAT
[SRA]
Identical group No.155916 (1 seq.)
>SRA1025877
SRR035085.100919
454 Sequencing (SRP001806)
346
272
-
Met
CAT
[SRA]
Identical group No.155961 (1 seq.)
>SRA1026813
SRR035085.298891
454 Sequencing (SRP001806)
181
105
-
Met
CAT
[SRA]
Identical group No.177328 (1 seq.)
>SRA1025700
SRR035085.68948
454 Sequencing (SRP001806)
6
82
+
Met
CAT
[SRA]
Identical group No.177387 (1 seq.)
>SRA1026115
SRR035085.146809
454 Sequencing (SRP001806)
9
83
+
Met
CAT
[SRA]
Identical group No.177420 (1 seq.)
>SRA1026348
SRR035085.190829
454 Sequencing (SRP001806)
152
226
+
Met
CAT
[SRA]
Identical group No.177458 (1 seq.)
>SRA1026574
SRR035085.231668
454 Sequencing (SRP001806)
159
83
-
Met
CAT
[SRA]
Identical group No.177494 (1 seq.)
>SRA1026743
SRR035085.278365
454 Sequencing (SRP001806)
105
179
+
Met
CAT
[SRA]
Identical group No.282028 (1 seq.)
>SRA1025916
SRR035085.110021
454 Sequencing (SRP001806)
348
274
-
Met
CAT
[SRA]
Identical group No.282032 (1 seq.)
>SRA1025927
SRR035085.111531
454 Sequencing (SRP001806)
423
495
+
Met
CAT
[SRA]
Identical group No.282058 (1 seq.)
>SRA1026091
SRR035085.141004
454 Sequencing (SRP001806)
399
326
-
Met
CAT
[SRA]
Identical group No.282109 (1 seq.)
>SRA1026435
SRR035085.206387
454 Sequencing (SRP001806)
202
129
-
Met
CAT
[SRA]
Identical group No.282562 (2 seq.)
>SRA1026430
SRR035085.205850
454 Sequencing (SRP001806)
164
237
+
Met
CAT
[SRA]
>SRA1026810
SRR035085.297183
454 Sequencing (SRP001806)
166
239
+
Met
CAT
[SRA]
Identical group No.399680 (1 seq.)
>SRA1026075
SRR035085.137729
454 Sequencing (SRP001806)
153
227
+
Met
CAT
[SRA]
Identical group No.399737 (1 seq.)
>SRA1026477
SRR035085.213769
454 Sequencing (SRP001806)
125
51
-
Met
CAT
[SRA]
Identical group No.399754 (1 seq.)
>SRA1026608
SRR035085.239220
454 Sequencing (SRP001806)
156
83
-
Met
CAT
[SRA]
Identical group No.399756 (2 seq.)
>SRA1026634
SRR035085.245955
454 Sequencing (SRP001806)
66
139
+
Met
CAT
[SRA]
>SRA1026736
SRR035085.276774
454 Sequencing (SRP001806)
66
139
+
Met
CAT
[SRA]
Identical group No.480733 (1 seq.)
>SRA1026758
SRR035085.282348
454 Sequencing (SRP001806)
104
33
-
Met
CAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK