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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = CCA
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.177349 (1 seq.)
>SRA1025848
SRR035085.93683
454 Sequencing (SRP001806)
266
342
+
Trp
CCA
[SRA]
Identical group No.177422 (1 seq.)
>SRA1026359
SRR035085.192566
454 Sequencing (SRP001806)
319
245
-
Trp
CCA
[SRA]
Identical group No.281930 (1 seq.)
>SRA1025462
SRR035085.14930
454 Sequencing (SRP001806)
157
232
+
Trp
CCA
[SRA]
Identical group No.281974 (2 seq.)
>SRA1025649
SRR035085.56527
454 Sequencing (SRP001806)
379
304
-
Trp
CCA
[SRA]
>SRA1025702
SRR035085.69052
454 Sequencing (SRP001806)
379
304
-
Trp
CCA
[SRA]
Identical group No.282000 (1 seq.)
>SRA1025759
SRR035085.77963
454 Sequencing (SRP001806)
346
420
+
Trp
CCA
[SRA]
Identical group No.282084 (1 seq.)
>SRA1026275
SRR035085.177496
454 Sequencing (SRP001806)
285
360
+
Trp
CCA
[SRA]
Identical group No.399623 (1 seq.)
>SRA1025648
SRR035085.56456
454 Sequencing (SRP001806)
105
179
+
Trp
CCA
[SRA]
Identical group No.399696 (1 seq.)
>SRA1026191
SRR035085.161462
454 Sequencing (SRP001806)
381
307
-
Trp
CCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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