This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = CCC
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.654271 (1 seq.)
>SRA1025756
SRR035085.77805
454 Sequencing (SRP001806)
228
157
-
Gly
CCC
[SRA]
Identical group No.654285 (1 seq.)
>SRA1025835
SRR035085.92084
454 Sequencing (SRP001806)
139
65
-
Gly
CCC
[SRA]
Identical group No.654301 (3 seq.)
>SRA1025958
SRR035085.116743
454 Sequencing (SRP001806)
263
334
+
Gly
CCC
[SRA]
>SRA1026190
SRR035085.161426
454 Sequencing (SRP001806)
263
334
+
Gly
CCC
[SRA]
>SRA1026476
SRR035085.213720
454 Sequencing (SRP001806)
263
334
+
Gly
CCC
[SRA]
Identical group No.654303 (1 seq.)
>SRA1025965
SRR035085.118580
454 Sequencing (SRP001806)
196
270
+
Gly
CCC
[SRA]
Identical group No.654386 (1 seq.)
>SRA1026588
SRR035085.233970
454 Sequencing (SRP001806)
322
395
+
Gly
CCC
[SRA]
Identical group No.654397 (1 seq.)
>SRA1026684
SRR035085.259052
454 Sequencing (SRP001806)
265
191
-
Gly
CCC
[SRA]
Identical group No.654407 (1 seq.)
>SRA1026773
SRR035085.286296
454 Sequencing (SRP001806)
174
248
+
Gly
CCC
[SRA]
Identical group No.779793 (1 seq.)
>SRA1025683
SRR035085.65802
454 Sequencing (SRP001806)
464
393
-
Gly
CCC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK