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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = CCG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.177323 (1 seq.)
>SRA1025690
SRR035085.67337
454 Sequencing (SRP001806)
200
273
+
Arg
CCG
[SRA]
Identical group No.177414 (2 seq.)
>WENV170016683
BARS01000922
[BARS] marine sediment metagenome; marine subsurface sediment at 0.8 meters below seafloor (mbsf), off the Shimokita Peninsula
951
1027
+
Arg
CCG
[ENA]
¢þ
>SRA1026291
SRR035085.180416
454 Sequencing (SRP001806)
464
540
+
Arg
CCG
[SRA]
Identical group No.177443 (2 seq.)
>SRA1019514
SRR035082.469884
454 Sequencing (SRP001803)
307
233
-
Arg
CCG
[SRA]
>SRA1026491
SRR035085.215917
454 Sequencing (SRP001806)
316
243
-
Arg
CCG
[SRA]
Identical group No.177462 (5 seq.)
>WENV170605169
FUWD010455781
[FUWD] metagenome; unknown
376
301
-
Arg
CCG
[ENA]
¢þ
>WENV170626134
FUWD013214529
[FUWD] metagenome; unknown
1899
1824
-
Arg
CCG
[ENA]
¢þ
>SRA1026594
SRR035085.235014
454 Sequencing (SRP001806)
208
133
-
Arg
CCG
[SRA]
>SRA1054467
SRR035099.138686
454 Sequencing (SRP001820)
387
312
-
Arg
CCG
[SRA]
>SRA1054799
SRR035099.217566
454 Sequencing (SRP001820)
32
107
+
Arg
CCG
[SRA]
Identical group No.399622 (6 seq.)
>WENV170623435
FUWD013151469
[FUWD] metagenome; unknown
918
847
-
Arg
CCG
[ENA]
¢þ
>WENV170631704
FUWD013362431
[FUWD] metagenome; unknown
918
847
-
Arg
CCG
[ENA]
¢þ
>SRA1025633
SRR035085.53603
454 Sequencing (SRP001806)
240
169
-
Arg
CCG
[SRA]
>SRA1026119
SRR035085.147220
454 Sequencing (SRP001806)
38
109
+
Arg
CCG
[SRA]
>SRA1032628
SRR035088.66713
454 Sequencing (SRP001809)
287
358
+
Arg
CCG
[SRA]
>SRA1041998
SRR035091.325337
454 Sequencing (SRP001812)
325
254
-
Arg
CCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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