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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = CCT
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240811 (1 seq.)
>SRA1026108
SRR035085.145371
454 Sequencing (SRP001806)
121
198
+
Arg
CCT
[SRA]
Identical group No.240832 (1 seq.)
>SRA1026598
SRR035085.236888
454 Sequencing (SRP001806)
266
340
+
Arg
CCT
[SRA]
Identical group No.272248 (2 seq.)
>SRA1025504
SRR035085.27075
454 Sequencing (SRP001806)
193
118
-
Arg
CCT
[SRA]
>SRA1025824
SRR035085.89323
454 Sequencing (SRP001806)
193
118
-
Arg
CCT
[SRA]
Identical group No.272308 (1 seq.)
>SRA1025797
SRR035085.85410
454 Sequencing (SRP001806)
111
184
+
Arg
CCT
[SRA]
Identical group No.272310 (1 seq.)
>SRA1025817
SRR035085.88645
454 Sequencing (SRP001806)
361
285
-
Arg
CCT
[SRA]
Identical group No.272331 (1 seq.)
>SRA1025922
SRR035085.110871
454 Sequencing (SRP001806)
415
340
-
Arg
CCT
[SRA]
Identical group No.453262 (1 seq.)
>SRA1025693
SRR035085.67726
454 Sequencing (SRP001806)
288
215
-
Arg
CCT
[SRA]
Identical group No.453406 (1 seq.)
>SRA1026536
SRR035085.223189
454 Sequencing (SRP001806)
470
543
+
Arg
CCT
[SRA]
Identical group No.453425 (1 seq.)
>SRA1026642
SRR035085.247460
454 Sequencing (SRP001806)
92
167
+
Arg
CCT
[SRA]
Identical group No.453433 (1 seq.)
>SRA1026689
SRR035085.261609
454 Sequencing (SRP001806)
247
322
+
Arg
CCT
[SRA]
Identical group No.453455 (1 seq.)
>SRA1026830
SRR035085.305476
454 Sequencing (SRP001806)
196
271
+
Arg
CCT
[SRA]
Identical group No.654241 (1 seq.)
>SRA1025536
SRR035085.35191
454 Sequencing (SRP001806)
233
307
+
Arg
CCT
[SRA]
Identical group No.654335 (1 seq.)
>SRA1026236
SRR035085.168690
454 Sequencing (SRP001806)
111
185
+
Arg
CCT
[SRA]
Identical group No.654367 (1 seq.)
>SRA1026441
SRR035085.207337
454 Sequencing (SRP001806)
70
144
+
Arg
CCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK