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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = CGA
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.3346 (1 seq.)
>SRA1026456
SRR035085.209927
454 Sequencing (SRP001806)
321
416
+
Ser
CGA
[SRA]
Identical group No.19913 (2 seq.)
>SRA1025766
SRR035085.79752
454 Sequencing (SRP001806)
354
265
-
Ser
CGA
[SRA]
>SRA1025778
SRR035085.81218
454 Sequencing (SRP001806)
353
264
-
Ser
CGA
[SRA]
Identical group No.30405 (1 seq.)
>SRA1025833
SRR035085.90763
454 Sequencing (SRP001806)
160
250
+
Ser
CGA
[SRA]
Identical group No.30406 (1 seq.)
>SRA1025929
SRR035085.111874
454 Sequencing (SRP001806)
198
288
+
Ser
CGA
[SRA]
Identical group No.30407 (1 seq.)
>SRA1026039
SRR035085.131578
454 Sequencing (SRP001806)
16
106
+
Ser
CGA
[SRA]
Identical group No.45842 (1 seq.)
>SRA1025493
SRR035085.24773
454 Sequencing (SRP001806)
358
446
+
Ser
CGA
[SRA]
Identical group No.45853 (1 seq.)
>SRA1026371
SRR035085.194880
454 Sequencing (SRP001806)
296
207
-
Ser
CGA
[SRA]
Identical group No.72765 (1 seq.)
>SRA1026013
SRR035085.126519
454 Sequencing (SRP001806)
247
159
-
Ser
CGA
[SRA]
Identical group No.218062 (1 seq.)
>SRA1026024
SRR035085.128566
454 Sequencing (SRP001806)
398
316
-
Ser
CGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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