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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = CGC
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.155962 (1 seq.)
>SRA1026816
SRR035085.299491
454 Sequencing (SRP001806)
356
280
-
Ala
CGC
[SRA]
Identical group No.177374 (1 seq.)
>SRA1026030
SRR035085.130666
454 Sequencing (SRP001806)
463
387
-
Ala
CGC
[SRA]
Identical group No.281929 (1 seq.)
>SRA1025456
SRR035085.10642
454 Sequencing (SRP001806)
99
173
+
Ala
CGC
[SRA]
Identical group No.281990 (1 seq.)
>SRA1025712
SRR035085.70217
454 Sequencing (SRP001806)
191
266
+
Ala
CGC
[SRA]
Identical group No.282008 (1 seq.)
>SRA1025806
SRR035085.86750
454 Sequencing (SRP001806)
242
167
-
Ala
CGC
[SRA]
Identical group No.399698 (1 seq.)
>SRA1026202
SRR035085.162158
454 Sequencing (SRP001806)
128
200
+
Ala
CGC
[SRA]
Identical group No.399728 (1 seq.)
>SRA1026413
SRR035085.203230
454 Sequencing (SRP001806)
241
169
-
Ala
CGC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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