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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = CGG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235081 (1 seq.)
>SRA1026791
SRR035085.292293
454 Sequencing (SRP001806)
250
172
-
Pro
CGG
[SRA]
Identical group No.240785 (1 seq.)
>SRA1025481
SRR035085.20938
454 Sequencing (SRP001806)
243
318
+
Pro
CGG
[SRA]
Identical group No.272414 (1 seq.)
>SRA1026470
SRR035085.213053
454 Sequencing (SRP001806)
321
397
+
Pro
CGG
[SRA]
Identical group No.272487 (1 seq.)
>SRA1026820
SRR035085.302830
454 Sequencing (SRP001806)
117
43
-
Pro
CGG
[SRA]
Identical group No.453384 (1 seq.)
>SRA1026344
SRR035085.189936
454 Sequencing (SRP001806)
139
66
-
Pro
CGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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