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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = CGT
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281935 (1 seq.)
>SRA1025476
SRR035085.18906
454 Sequencing (SRP001806)
219
144
-
Thr
CGT
[SRA]
Identical group No.281981 (1 seq.)
>SRA1025675
SRR035085.64495
454 Sequencing (SRP001806)
216
141
-
Thr
CGT
[SRA]
Identical group No.282099 (1 seq.)
>SRA1026362
SRR035085.193351
454 Sequencing (SRP001806)
257
182
-
Thr
CGT
[SRA]
Identical group No.282146 (1 seq.)
>SRA1026748
SRR035085.279127
454 Sequencing (SRP001806)
74
149
+
Thr
CGT
[SRA]
Identical group No.399641 (1 seq.)
>SRA1025770
SRR035085.80118
454 Sequencing (SRP001806)
327
401
+
Thr
CGT
[SRA]
Identical group No.399683 (1 seq.)
>SRA1026092
SRR035085.141317
454 Sequencing (SRP001806)
45
116
+
Thr
CGT
[SRA]
Identical group No.399693 (1 seq.)
>SRA1026179
SRR035085.159317
454 Sequencing (SRP001806)
326
400
+
Thr
CGT
[SRA]
Identical group No.399741 (1 seq.)
>SRA1026516
SRR035085.219778
454 Sequencing (SRP001806)
388
314
-
Thr
CGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK