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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = CTC
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152077 (1 seq.)
>SRA1025727
SRR035085.71705
454 Sequencing (SRP001806)
410
334
-
Glu
CTC
[SRA]
Identical group No.155958 (1 seq.)
>SRA1026753
SRR035085.280202
454 Sequencing (SRP001806)
424
498
+
Glu
CTC
[SRA]
Identical group No.282015 (1 seq.)
>SRA1025837
SRR035085.92694
454 Sequencing (SRP001806)
266
191
-
Glu
CTC
[SRA]
Identical group No.399637 (1 seq.)
>SRA1025752
SRR035085.76541
454 Sequencing (SRP001806)
387
459
+
Glu
CTC
[SRA]
Identical group No.399703 (1 seq.)
>SRA1026254
SRR035085.172645
454 Sequencing (SRP001806)
158
85
-
Glu
CTC
[SRA]
Identical group No.399724 (1 seq.)
>SRA1026395
SRR035085.200604
454 Sequencing (SRP001806)
157
231
+
Glu
CTC
[SRA]
Identical group No.480656 (1 seq.)
>SRA1025464
SRR035085.15508
454 Sequencing (SRP001806)
176
105
-
Glu
CTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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