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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = CTG
HIT:
17 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.453219 (1 seq.)
>SRA1025511
SRR035085.28146
454 Sequencing (SRP001806)
275
201
-
Gln
CTG
[SRA]
Identical group No.453271 (1 seq.)
>SRA1025732
SRR035085.72021
454 Sequencing (SRP001806)
201
126
-
Gln
CTG
[SRA]
Identical group No.453346 (1 seq.)
>SRA1026131
SRR035085.149233
454 Sequencing (SRP001806)
29
104
+
Gln
CTG
[SRA]
Identical group No.654371 (1 seq.)
>SRA1026475
SRR035085.213659
454 Sequencing (SRP001806)
17
91
+
Gln
CTG
[SRA]
Identical group No.779778 (1 seq.)
>SRA1025534
SRR035085.34998
454 Sequencing (SRP001806)
82
9
-
Gln
CTG
[SRA]
Identical group No.779779 (1 seq.)
>SRA1025535
SRR035085.35031
454 Sequencing (SRP001806)
55
128
+
Gln
CTG
[SRA]
Identical group No.779787 (1 seq.)
>SRA1025632
SRR035085.53463
454 Sequencing (SRP001806)
327
402
+
Gln
CTG
[SRA]
Identical group No.779795 (1 seq.)
>SRA1025722
SRR035085.71183
454 Sequencing (SRP001806)
291
218
-
Gln
CTG
[SRA]
Identical group No.779811 (1 seq.)
>SRA1026022
SRR035085.128015
454 Sequencing (SRP001806)
237
310
+
Gln
CTG
[SRA]
Identical group No.779812 (2 seq.)
>SRA1026038
SRR035085.131328
454 Sequencing (SRP001806)
106
179
+
Gln
CTG
[SRA]
>SRA1026210
SRR035085.163949
454 Sequencing (SRP001806)
107
180
+
Gln
CTG
[SRA]
Identical group No.779816 (1 seq.)
>SRA1026083
SRR035085.140608
454 Sequencing (SRP001806)
149
222
+
Gln
CTG
[SRA]
Identical group No.779829 (1 seq.)
>SRA1026361
SRR035085.193248
454 Sequencing (SRP001806)
354
427
+
Gln
CTG
[SRA]
Identical group No.779832 (1 seq.)
>SRA1026421
SRR035085.204731
454 Sequencing (SRP001806)
278
205
-
Gln
CTG
[SRA]
Identical group No.779842 (1 seq.)
>SRA1026526
SRR035085.221750
454 Sequencing (SRP001806)
466
393
-
Gln
CTG
[SRA]
Identical group No.779843 (1 seq.)
>SRA1026576
SRR035085.231874
454 Sequencing (SRP001806)
53
124
+
Gln
CTG
[SRA]
Identical group No.779848 (1 seq.)
>SRA1026664
SRR035085.253308
454 Sequencing (SRP001806)
174
247
+
Gln
CTG
[SRA]
Identical group No.779984 (1 seq.)
>SRA1025466
SRR035085.16223
454 Sequencing (SRP001806)
106
35
-
Gln
CTG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK