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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = CTG
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.453216 (7 seq.)
>WENV170623078
FUWD013135322
[FUWD] metagenome; unknown
239
311
+
Gln
CTG
[ENA]
¢þ
>WENV170631317
FUWD013348194
[FUWD] metagenome; unknown
239
311
+
Gln
CTG
[ENA]
¢þ
>SRA1025501
SRR035085.26097
454 Sequencing (SRP001806)
102
174
+
Gln
CTG
[SRA]
>SRA1026121
SRR035085.147578
454 Sequencing (SRP001806)
249
321
+
Gln
CTG
[SRA]
>SRA1030350
SRR035087.265842
454 Sequencing (SRP001808)
85
13
-
Gln
CTG
[SRA]
>SRA1031672
SRR035087.468430
454 Sequencing (SRP001808)
272
200
-
Gln
CTG
[SRA]
>SRA1043371
SRR035092.103833
454 Sequencing (SRP001813)
455
383
-
Gln
CTG
[SRA]
Identical group No.453253 (2 seq.)
>SRA1025662
SRR035085.60458
454 Sequencing (SRP001806)
103
177
+
Gln
CTG
[SRA]
>SRA1043488
SRR035092.124422
454 Sequencing (SRP001813)
265
339
+
Gln
CTG
[SRA]
Identical group No.654318 (3 seq.)
>WENV170607849
FUWD010861021
[FUWD] metagenome; unknown
83
157
+
Gln
CTG
[ENA]
¢þ
>SRA1026098
SRR035085.141883
454 Sequencing (SRP001806)
93
167
+
Gln
CTG
[SRA]
>SRA1048556
SRR035094.198111
454 Sequencing (SRP001815)
369
295
-
Gln
CTG
[SRA]
Identical group No.654345 (2 seq.)
>WENV170569967
FLMP01369905
[FLMP] seawater metagenome; seawater
242
315
+
Gln
CTG
[ENA]
¢þ
>SRA1026315
SRR035085.184871
454 Sequencing (SRP001806)
182
257
+
Gln
CTG
[SRA]
Identical group No.654409 (5 seq.)
>WENV170612291
FUWD012565605
[FUWD] metagenome; unknown
113
39
-
Gln
CTG
[ENA]
¢þ
>SRA1026794
SRR035085.292589
454 Sequencing (SRP001806)
125
199
+
Gln
CTG
[SRA]
>SRA1034216
SRR035089.26233
454 Sequencing (SRP001810)
209
135
-
Gln
CTG
[SRA]
>SRA1034224
SRR035089.28069
454 Sequencing (SRP001810)
209
135
-
Gln
CTG
[SRA]
>SRA1035347
SRR035089.287771
454 Sequencing (SRP001810)
209
135
-
Gln
CTG
[SRA]
Identical group No.779800 (3 seq.)
>WENV170611845
FUWD012416531
[FUWD] metagenome; unknown
493
420
-
Gln
CTG
[ENA]
¢þ
>SRA1025815
SRR035085.88307
454 Sequencing (SRP001806)
507
434
-
Gln
CTG
[SRA]
>SRA1031070
SRR035087.368023
454 Sequencing (SRP001808)
241
314
+
Gln
CTG
[SRA]
Identical group No.779807 (8 seq.)
>WENV170621243
FUWD013053582
[FUWD] metagenome; unknown
817
746
-
Gln
CTG
[ENA]
¢þ
>WENV170629423
FUWD013270080
[FUWD] metagenome; unknown
817
746
-
Gln
CTG
[ENA]
¢þ
>SRA1017852
SRR035082.206485
454 Sequencing (SRP001803)
374
303
-
Gln
CTG
[SRA]
>SRA1018100
SRR035082.240488
454 Sequencing (SRP001803)
202
131
-
Gln
CTG
[SRA]
>SRA1025957
SRR035085.116694
454 Sequencing (SRP001806)
226
297
+
Gln
CTG
[SRA]
>SRA1028791
SRR035087.8142
454 Sequencing (SRP001808)
392
321
-
Gln
CTG
[SRA]
>SRA1031314
SRR035087.410715
454 Sequencing (SRP001808)
94
165
+
Gln
CTG
[SRA]
>SRA1044055
SRR035092.215370
454 Sequencing (SRP001813)
353
282
-
Gln
CTG
[SRA]
Identical group No.779813 (9 seq.)
>WENV170600491
FUWD010129435
[FUWD] metagenome; unknown
117
44
-
Gln
CTG
[ENA]
¢þ
>WENV170620474
FUWD013032336
[FUWD] metagenome; unknown
1922
1995
+
Gln
CTG
[ENA]
¢þ
>WENV170628617
FUWD013249803
[FUWD] metagenome; unknown
1922
1995
+
Gln
CTG
[ENA]
¢þ
>SRA1026055
SRR035085.132829
454 Sequencing (SRP001806)
549
476
-
Gln
CTG
[SRA]
>SRA1029110
SRR035087.75595
454 Sequencing (SRP001808)
117
44
-
Gln
CTG
[SRA]
>SRA1040717
SRR035091.136161
454 Sequencing (SRP001812)
15
88
+
Gln
CTG
[SRA]
>SRA1040816
SRR035091.153638
454 Sequencing (SRP001812)
371
444
+
Gln
CTG
[SRA]
>SRA1044922
SRR035092.373176
454 Sequencing (SRP001813)
57
130
+
Gln
CTG
[SRA]
>SRA1049833
SRR035095.145098
454 Sequencing (SRP001816)
116
43
-
Gln
CTG
[SRA]
Identical group No.779822 (16 seq.)
>WENV170598893
FUWD010053912
[FUWD] metagenome; unknown
187
260
+
Gln
CTG
[ENA]
¢þ
>WENV170624169
FUWD013176622
[FUWD] metagenome; unknown
1724
1651
-
Gln
CTG
[ENA]
¢þ
>WENV170624455
FUWD013181990
[FUWD] metagenome; unknown
1373
1446
+
Gln
CTG
[ENA]
¢þ
>WENV170624456
FUWD013181991
[FUWD] metagenome; unknown
288
361
+
Gln
CTG
[ENA]
¢þ
>WENV170632449
FUWD013382537
[FUWD] metagenome; unknown
1724
1651
-
Gln
CTG
[ENA]
¢þ
>WENV170632741
FUWD013386847
[FUWD] metagenome; unknown
288
361
+
Gln
CTG
[ENA]
¢þ
>SRA1026178
SRR035085.158923
454 Sequencing (SRP001806)
244
171
-
Gln
CTG
[SRA]
>SRA1026678
SRR035085.257328
454 Sequencing (SRP001806)
86
159
+
Gln
CTG
[SRA]
>SRA1030992
SRR035087.358104
454 Sequencing (SRP001808)
158
85
-
Gln
CTG
[SRA]
>SRA1032120
SRR035087.556989
454 Sequencing (SRP001808)
187
260
+
Gln
CTG
[SRA]
>SRA1032245
SRR035087.584968
454 Sequencing (SRP001808)
150
77
-
Gln
CTG
[SRA]
>SRA1034071
SRR035088.474718
454 Sequencing (SRP001809)
153
80
-
Gln
CTG
[SRA]
>SRA1047865
SRR035094.58218
454 Sequencing (SRP001815)
80
153
+
Gln
CTG
[SRA]
>SRA1047900
SRR035094.64184
454 Sequencing (SRP001815)
377
304
-
Gln
CTG
[SRA]
>SRA1049140
SRR035095.27125
454 Sequencing (SRP001816)
506
433
-
Gln
CTG
[SRA]
>SRA1050431
SRR035095.261976
454 Sequencing (SRP001816)
243
316
+
Gln
CTG
[SRA]
Identical group No.779827 (6 seq.)
>WENV170621059
FUWD013047858
[FUWD] metagenome; unknown
1043
973
-
Gln
CTG
[ENA]
¢þ
>WENV170629226
FUWD013264622
[FUWD] metagenome; unknown
1043
973
-
Gln
CTG
[ENA]
¢þ
>SRA1026311
SRR035085.184197
454 Sequencing (SRP001806)
136
66
-
Gln
CTG
[SRA]
>SRA1029875
SRR035087.195497
454 Sequencing (SRP001808)
480
410
-
Gln
CTG
[SRA]
>SRA1032475
SRR035088.19139
454 Sequencing (SRP001809)
119
189
+
Gln
CTG
[SRA]
>SRA1039149
SRR035090.432716
454 Sequencing (SRP001811)
56
126
+
Gln
CTG
[SRA]
Identical group No.779833 (2 seq.)
>WENV170607859
FUWD010862066
[FUWD] metagenome; unknown
406
336
-
Gln
CTG
[ENA]
¢þ
>SRA1026444
SRR035085.208175
454 Sequencing (SRP001806)
415
345
-
Gln
CTG
[SRA]
Identical group No.779849 (8 seq.)
>WENV170617761
FUWD012936163
[FUWD] metagenome; unknown
786
713
-
Gln
CTG
[ENA]
¢þ
>WENV170620363
FUWD013030485
[FUWD] metagenome; unknown
339
412
+
Gln
CTG
[ENA]
¢þ
>WENV170628500
FUWD013248056
[FUWD] metagenome; unknown
339
412
+
Gln
CTG
[ENA]
¢þ
>SRA1018010
SRR035082.226996
454 Sequencing (SRP001803)
227
154
-
Gln
CTG
[SRA]
>SRA1026722
SRR035085.272064
454 Sequencing (SRP001806)
164
237
+
Gln
CTG
[SRA]
>SRA1029373
SRR035087.118459
454 Sequencing (SRP001808)
291
218
-
Gln
CTG
[SRA]
>SRA1030713
SRR035087.317663
454 Sequencing (SRP001808)
306
233
-
Gln
CTG
[SRA]
>SRA1035560
SRR035089.330567
454 Sequencing (SRP001810)
199
126
-
Gln
CTG
[SRA]
Identical group No.779854 (3 seq.)
>WENV170611910
FUWD012436351
[FUWD] metagenome; unknown
234
305
+
Gln
CTG
[ENA]
¢þ
>SRA1026769
SRR035085.285183
454 Sequencing (SRP001806)
245
316
+
Gln
CTG
[SRA]
>SRA1048479
SRR035094.182836
454 Sequencing (SRP001815)
226
155
-
Gln
CTG
[SRA]
Identical group No.779855 (7 seq.)
>WENV170625363
FUWD013196638
[FUWD] metagenome; unknown
981
1054
+
Gln
CTG
[ENA]
¢þ
>WENV170633603
FUWD013399285
[FUWD] metagenome; unknown
981
1054
+
Gln
CTG
[ENA]
¢þ
>SRA1026803
SRR035085.295011
454 Sequencing (SRP001806)
288
361
+
Gln
CTG
[SRA]
>SRA1033082
SRR035088.169129
454 Sequencing (SRP001809)
248
321
+
Gln
CTG
[SRA]
>SRA1033600
SRR035088.299055
454 Sequencing (SRP001809)
57
130
+
Gln
CTG
[SRA]
>SRA1033850
SRR035088.377365
454 Sequencing (SRP001809)
50
123
+
Gln
CTG
[SRA]
>SRA1049281
SRR035095.49769
454 Sequencing (SRP001816)
275
348
+
Gln
CTG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK