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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = GAA
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272262 (1 seq.)
>SRA1025540
SRR035085.35923
454 Sequencing (SRP001806)
205
280
+
Phe
GAA
[SRA]
Identical group No.453274 (1 seq.)
>SRA1025743
SRR035085.74660
454 Sequencing (SRP001806)
65
140
+
Phe
GAA
[SRA]
Identical group No.453280 (1 seq.)
>SRA1025768
SRR035085.80118
454 Sequencing (SRP001806)
161
236
+
Phe
GAA
[SRA]
Identical group No.453283 (1 seq.)
>SRA1025789
SRR035085.83612
454 Sequencing (SRP001806)
236
311
+
Phe
GAA
[SRA]
Identical group No.453318 (1 seq.)
>SRA1025954
SRR035085.115828
454 Sequencing (SRP001806)
94
169
+
Phe
GAA
[SRA]
Identical group No.453332 (1 seq.)
>SRA1026048
SRR035085.132141
454 Sequencing (SRP001806)
323
397
+
Phe
GAA
[SRA]
Identical group No.453357 (1 seq.)
>SRA1026185
SRR035085.160063
454 Sequencing (SRP001806)
118
43
-
Phe
GAA
[SRA]
Identical group No.453371 (1 seq.)
>SRA1026284
SRR035085.179240
454 Sequencing (SRP001806)
351
276
-
Phe
GAA
[SRA]
Identical group No.453377 (1 seq.)
>SRA1026316
SRR035085.184871
454 Sequencing (SRP001806)
329
403
+
Phe
GAA
[SRA]
Identical group No.453439 (1 seq.)
>SRA1026738
SRR035085.276879
454 Sequencing (SRP001806)
207
132
-
Phe
GAA
[SRA]
Identical group No.453443 (1 seq.)
>SRA1026767
SRR035085.284793
454 Sequencing (SRP001806)
153
78
-
Phe
GAA
[SRA]
Identical group No.654238 (1 seq.)
>SRA1025491
SRR035085.24140
454 Sequencing (SRP001806)
216
288
+
Phe
GAA
[SRA]
Identical group No.654377 (2 seq.)
>SRA1026528
SRR035085.222128
454 Sequencing (SRP001806)
187
259
+
Phe
GAA
[SRA]
>SRA1026729
SRR035085.275221
454 Sequencing (SRP001806)
188
260
+
Phe
GAA
[SRA]
Identical group No.779839 (1 seq.)
>SRA1026503
SRR035085.217778
454 Sequencing (SRP001806)
192
120
-
Phe
GAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK