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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = GAC
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.155934 (1 seq.)
>SRA1026259
SRR035085.174277
454 Sequencing (SRP001806)
282
207
-
Val
GAC
[SRA]
Identical group No.177324 (1 seq.)
>SRA1025692
SRR035085.67683
454 Sequencing (SRP001806)
379
454
+
Val
GAC
[SRA]
Identical group No.177366 (1 seq.)
>SRA1025955
SRR035085.115953
454 Sequencing (SRP001806)
22
98
+
Val
GAC
[SRA]
Identical group No.177389 (1 seq.)
>SRA1026126
SRR035085.148452
454 Sequencing (SRP001806)
167
241
+
Val
GAC
[SRA]
Identical group No.177390 (1 seq.)
>SRA1026138
SRR035085.151149
454 Sequencing (SRP001806)
388
463
+
Val
GAC
[SRA]
Identical group No.177396 (2 seq.)
>SRA1026189
SRR035085.161046
454 Sequencing (SRP001806)
458
533
+
Val
GAC
[SRA]
>SRA1026484
SRR035085.214002
454 Sequencing (SRP001806)
454
530
+
Val
GAC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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