This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = GAG
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.46718 (1 seq.)
>SRA1025882
SRR035085.101606
454 Sequencing (SRP001806)
410
324
-
Leu
GAG
[SRA]
Identical group No.46729 (1 seq.)
>SRA1026772
SRR035085.285479
454 Sequencing (SRP001806)
101
13
-
Leu
GAG
[SRA]
Identical group No.56223 (1 seq.)
>SRA1025992
SRR035085.122445
454 Sequencing (SRP001806)
256
169
-
Leu
GAG
[SRA]
Identical group No.56228 (1 seq.)
>SRA1026183
SRR035085.160063
454 Sequencing (SRP001806)
332
247
-
Leu
GAG
[SRA]
Identical group No.73250 (1 seq.)
>SRA1025713
SRR035085.70455
454 Sequencing (SRP001806)
245
331
+
Leu
GAG
[SRA]
Identical group No.73260 (1 seq.)
>SRA1026085
SRR035085.140649
454 Sequencing (SRP001806)
237
321
+
Leu
GAG
[SRA]
Identical group No.73269 (1 seq.)
>SRA1026521
SRR035085.221054
454 Sequencing (SRP001806)
24
110
+
Leu
GAG
[SRA]
Identical group No.73270 (1 seq.)
>SRA1026560
SRR035085.227985
454 Sequencing (SRP001806)
160
246
+
Leu
GAG
[SRA]
Identical group No.100017 (1 seq.)
>SRA1026775
SRR035085.286420
454 Sequencing (SRP001806)
290
374
+
Leu
GAG
[SRA]
Identical group No.117986 (2 seq.)
>SRA1025959
SRR035085.117246
454 Sequencing (SRP001806)
273
192
-
Leu
GAG
[SRA]
>SRA1026356
SRR035085.192192
454 Sequencing (SRP001806)
272
191
-
Leu
GAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK