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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = GAT
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.155931 (1 seq.)
>SRA1026224
SRR035085.165983
454 Sequencing (SRP001806)
174
248
+
Ile
GAT
[SRA]
Identical group No.155939 (1 seq.)
>SRA1026360
SRR035085.193236
454 Sequencing (SRP001806)
141
64
-
Ile
GAT
[SRA]
Identical group No.177413 (1 seq.)
>SRA1026286
SRR035085.179676
454 Sequencing (SRP001806)
223
147
-
Ile
GAT
[SRA]
Identical group No.177436 (1 seq.)
>SRA1026454
SRR035085.209821
454 Sequencing (SRP001806)
308
232
-
Ile
GAT
[SRA]
Identical group No.177477 (1 seq.)
>SRA1026666
SRR035085.253875
454 Sequencing (SRP001806)
274
199
-
Ile
GAT
[SRA]
Identical group No.282101 (1 seq.)
>SRA1026368
SRR035085.194269
454 Sequencing (SRP001806)
287
362
+
Ile
GAT
[SRA]
Identical group No.480657 (1 seq.)
>SRA1025475
SRR035085.18875
454 Sequencing (SRP001806)
115
186
+
Ile
GAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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