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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = GCA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152080 (1 seq.)
>SRA1026505
SRR035085.217995
454 Sequencing (SRP001806)
245
169
-
Cys
GCA
[SRA]
Identical group No.282133 (1 seq.)
>SRA1026637
SRR035085.246412
454 Sequencing (SRP001806)
93
165
+
Cys
GCA
[SRA]
Identical group No.480658 (1 seq.)
>SRA1025486
SRR035085.22875
454 Sequencing (SRP001806)
188
259
+
Cys
GCA
[SRA]
Identical group No.480687 (1 seq.)
>SRA1025914
SRR035085.109075
454 Sequencing (SRP001806)
356
283
-
Cys
GCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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