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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = GCC
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.453294 (1 seq.)
>SRA1025856
SRR035085.95002
454 Sequencing (SRP001806)
111
187
+
Gly
GCC
[SRA]
Identical group No.453392 (1 seq.)
>SRA1026383
SRR035085.198331
454 Sequencing (SRP001806)
159
234
+
Gly
GCC
[SRA]
Identical group No.453409 (1 seq.)
>SRA1026556
SRR035085.227255
454 Sequencing (SRP001806)
111
36
-
Gly
GCC
[SRA]
Identical group No.654277 (1 seq.)
>SRA1025788
SRR035085.83612
454 Sequencing (SRP001806)
157
231
+
Gly
GCC
[SRA]
Identical group No.654411 (1 seq.)
>SRA1026826
SRR035085.304690
454 Sequencing (SRP001806)
165
94
-
Gly
GCC
[SRA]
Identical group No.779783 (1 seq.)
>SRA1025606
SRR035085.48433
454 Sequencing (SRP001806)
223
150
-
Gly
GCC
[SRA]
Identical group No.779841 (1 seq.)
>SRA1026509
SRR035085.218295
454 Sequencing (SRP001806)
337
267
-
Gly
GCC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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