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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = GCG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.177276 (1 seq.)
>SRA1025437
SRR035085.3920
454 Sequencing (SRP001806)
37
112
+
Arg
GCG
[SRA]
Identical group No.177337 (4 seq.)
>WENV183515623
OMKS01077932
[OMKS] sediment metagenome; hot spring sediment
190
116
-
Arg
GCG
[ENA]
¢þ
>WENV170017671
BARU01011056
[BARU] marine sediment metagenome; marine subsurface sediment at 18.6 meters below seafloor (mbsf), off the Shimokita Peninsula
139
63
-
Arg
GCG
[ENA]
¢þ
>WENV170647710
JREQ01002986
[JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C
13911
13987
+
Arg
GCG
[ENA]
¢þ
>SRA1025776
SRR035085.80724
454 Sequencing (SRP001806)
249
325
+
Arg
GCG
[SRA]
Identical group No.177402 (1 seq.)
>SRA1026217
SRR035085.164949
454 Sequencing (SRP001806)
201
275
+
Arg
GCG
[SRA]
Identical group No.282155 (1 seq.)
>SRA1026819
SRR035085.299991
454 Sequencing (SRP001806)
93
168
+
Arg
GCG
[SRA]
Identical group No.399702 (1 seq.)
>SRA1026251
SRR035085.172383
454 Sequencing (SRP001806)
195
123
-
Arg
GCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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