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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = GCT
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.5713 (1 seq.)
>SRA1025767
SRR035085.80118
454 Sequencing (SRP001806)
65
158
+
Ser
GCT
[SRA]
Identical group No.5715 (1 seq.)
>SRA1025785
SRR035085.83273
454 Sequencing (SRP001806)
242
335
+
Ser
GCT
[SRA]
Identical group No.5719 (1 seq.)
>SRA1026133
SRR035085.149412
454 Sequencing (SRP001806)
440
347
-
Ser
GCT
[SRA]
Identical group No.8552 (1 seq.)
>SRA1025524
SRR035085.33518
454 Sequencing (SRP001806)
382
472
+
Ser
GCT
[SRA]
Identical group No.13272 (1 seq.)
>SRA1026248
SRR035085.171285
454 Sequencing (SRP001806)
286
377
+
Ser
GCT
[SRA]
Identical group No.13275 (1 seq.)
>SRA1026691
SRR035085.261808
454 Sequencing (SRP001806)
193
284
+
Ser
GCT
[SRA]
Identical group No.20320 (1 seq.)
>SRA1026534
SRR035085.222531
454 Sequencing (SRP001806)
286
376
+
Ser
GCT
[SRA]
Identical group No.56232 (1 seq.)
>SRA1026380
SRR035085.197658
454 Sequencing (SRP001806)
410
323
-
Ser
GCT
[SRA]
Identical group No.73240 (1 seq.)
>SRA1025467
SRR035085.16747
454 Sequencing (SRP001806)
410
323
-
Ser
GCT
[SRA]
Identical group No.73244 (1 seq.)
>SRA1025564
SRR035085.39774
454 Sequencing (SRP001806)
153
67
-
Ser
GCT
[SRA]
Identical group No.100012 (1 seq.)
>SRA1026327
SRR035085.186346
454 Sequencing (SRP001806)
409
323
-
Ser
GCT
[SRA]
Identical group No.118005 (1 seq.)
>SRA1026548
SRR035085.226153
454 Sequencing (SRP001806)
132
213
+
Ser
GCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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