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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = GGA
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.3345 (1 seq.)
>SRA1025966
SRR035085.118620
454 Sequencing (SRP001806)
204
109
-
Ser
GGA
[SRA]
Identical group No.5744 (1 seq.)
>SRA1025836
SRR035085.92221
454 Sequencing (SRP001806)
203
109
-
Ser
GGA
[SRA]
Identical group No.5745 (1 seq.)
>SRA1026688
SRR035085.261271
454 Sequencing (SRP001806)
163
257
+
Ser
GGA
[SRA]
Identical group No.8243 (4 seq.)
>SRA1025724
SRR035085.71529
454 Sequencing (SRP001806)
35
128
+
Ser
GGA
[SRA]
>SRA1025860
SRR035085.95989
454 Sequencing (SRP001806)
35
128
+
Ser
GGA
[SRA]
>SRA1026173
SRR035085.157749
454 Sequencing (SRP001806)
35
128
+
Ser
GGA
[SRA]
>SRA1026392
SRR035085.200327
454 Sequencing (SRP001806)
35
128
+
Ser
GGA
[SRA]
Identical group No.30404 (2 seq.)
>SRA1025604
SRR035085.48399
454 Sequencing (SRP001806)
126
37
-
Ser
GGA
[SRA]
>SRA1026053
SRR035085.132566
454 Sequencing (SRP001806)
142
53
-
Ser
GGA
[SRA]
Identical group No.30408 (1 seq.)
>SRA1026105
SRR035085.143912
454 Sequencing (SRP001806)
231
141
-
Ser
GGA
[SRA]
Identical group No.30413 (1 seq.)
>SRA1026771
SRR035085.285473
454 Sequencing (SRP001806)
240
151
-
Ser
GGA
[SRA]
Identical group No.45846 (1 seq.)
>SRA1025892
SRR035085.103880
454 Sequencing (SRP001806)
123
209
+
Ser
GGA
[SRA]
Identical group No.87021 (1 seq.)
>SRA1025560
SRR035085.39567
454 Sequencing (SRP001806)
82
167
+
Ser
GGA
[SRA]
Identical group No.87024 (1 seq.)
>SRA1025731
SRR035085.71880
454 Sequencing (SRP001806)
190
277
+
Ser
GGA
[SRA]
Identical group No.87028 (1 seq.)
>SRA1025943
SRR035085.114532
454 Sequencing (SRP001806)
206
119
-
Ser
GGA
[SRA]
Identical group No.87046 (1 seq.)
>SRA1026700
SRR035085.263935
454 Sequencing (SRP001806)
40
127
+
Ser
GGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK