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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = GGG
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.155917 (1 seq.)
>SRA1025893
SRR035085.104590
454 Sequencing (SRP001806)
108
34
-
Pro
GGG
[SRA]
Identical group No.155954 (1 seq.)
>SRA1026680
SRR035085.257750
454 Sequencing (SRP001806)
30
107
+
Pro
GGG
[SRA]
Identical group No.155957 (1 seq.)
>SRA1026741
SRR035085.277773
454 Sequencing (SRP001806)
254
180
-
Pro
GGG
[SRA]
Identical group No.155959 (1 seq.)
>SRA1026762
SRR035085.283840
454 Sequencing (SRP001806)
350
273
-
Pro
GGG
[SRA]
Identical group No.155960 (1 seq.)
>SRA1026787
SRR035085.291608
454 Sequencing (SRP001806)
169
246
+
Pro
GGG
[SRA]
Identical group No.177419 (1 seq.)
>SRA1026343
SRR035085.189931
454 Sequencing (SRP001806)
105
29
-
Pro
GGG
[SRA]
Identical group No.399611 (1 seq.)
>SRA1025548
SRR035085.37055
454 Sequencing (SRP001806)
17
91
+
Pro
GGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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