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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = GGT
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272470 (1 seq.)
>SRA1026723
SRR035085.272094
454 Sequencing (SRP001806)
20
93
+
Thr
GGT
[SRA]
Identical group No.453334 (1 seq.)
>SRA1026058
SRR035085.134016
454 Sequencing (SRP001806)
200
128
-
Thr
GGT
[SRA]
Identical group No.453347 (1 seq.)
>SRA1026140
SRR035085.151763
454 Sequencing (SRP001806)
131
59
-
Thr
GGT
[SRA]
Identical group No.453418 (1 seq.)
>SRA1026620
SRR035085.243413
454 Sequencing (SRP001806)
377
304
-
Thr
GGT
[SRA]
Identical group No.453438 (1 seq.)
>SRA1026725
SRR035085.272600
454 Sequencing (SRP001806)
282
207
-
Thr
GGT
[SRA]
Identical group No.654256 (2 seq.)
>SRA1025651
SRR035085.57305
454 Sequencing (SRP001806)
336
263
-
Thr
GGT
[SRA]
>SRA1026387
SRR035085.198589
454 Sequencing (SRP001806)
376
447
+
Thr
GGT
[SRA]
Identical group No.654257 (1 seq.)
>SRA1025686
SRR035085.65952
454 Sequencing (SRP001806)
422
351
-
Thr
GGT
[SRA]
Identical group No.654290 (1 seq.)
>SRA1025874
SRR035085.99708
454 Sequencing (SRP001806)
112
40
-
Thr
GGT
[SRA]
Identical group No.654369 (1 seq.)
>SRA1026465
SRR035085.212022
454 Sequencing (SRP001806)
228
302
+
Thr
GGT
[SRA]
Identical group No.779784 (1 seq.)
>SRA1025611
SRR035085.49215
454 Sequencing (SRP001806)
180
107
-
Thr
GGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK