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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = GTA
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56215 (1 seq.)
>SRA1025585
SRR035085.42204
454 Sequencing (SRP001806)
389
301
-
Tyr
GTA
[SRA]
Identical group No.73241 (1 seq.)
>SRA1025506
SRR035085.27278
454 Sequencing (SRP001806)
354
268
-
Tyr
GTA
[SRA]
Identical group No.100016 (1 seq.)
>SRA1026507
SRR035085.218131
454 Sequencing (SRP001806)
285
370
+
Tyr
GTA
[SRA]
Identical group No.118000 (1 seq.)
>SRA1026463
SRR035085.212022
454 Sequencing (SRP001806)
47
131
+
Tyr
GTA
[SRA]
Identical group No.147810 (1 seq.)
>SRA1025853
SRR035085.94636
454 Sequencing (SRP001806)
267
349
+
Tyr
GTA
[SRA]
Identical group No.399660 (3 seq.)
>SRA1025902
SRR035085.105658
454 Sequencing (SRP001806)
88
161
+
Tyr
GTA
[SRA]
>SRA1026176
SRR035085.158440
454 Sequencing (SRP001806)
87
160
+
Tyr
GTA
[SRA]
>SRA1026198
SRR035085.161855
454 Sequencing (SRP001806)
88
161
+
Tyr
GTA
[SRA]
Identical group No.480674 (1 seq.)
>SRA1025669
SRR035085.63974
454 Sequencing (SRP001806)
231
302
+
Tyr
GTA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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