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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = GTC
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152076 (1 seq.)
>SRA1025718
SRR035085.70610
454 Sequencing (SRP001806)
91
13
-
Asp
GTC
[SRA]
Identical group No.155909 (1 seq.)
>SRA1025660
SRR035085.60114
454 Sequencing (SRP001806)
302
377
+
Asp
GTC
[SRA]
Identical group No.155927 (1 seq.)
>SRA1026192
SRR035085.161495
454 Sequencing (SRP001806)
144
221
+
Asp
GTC
[SRA]
Identical group No.177322 (1 seq.)
>SRA1025678
SRR035085.64876
454 Sequencing (SRP001806)
200
276
+
Asp
GTC
[SRA]
Identical group No.177460 (1 seq.)
>SRA1026589
SRR035085.233989
454 Sequencing (SRP001806)
3
79
+
Asp
GTC
[SRA]
Identical group No.177468 (1 seq.)
>SRA1026627
SRR035085.244295
454 Sequencing (SRP001806)
303
376
+
Asp
GTC
[SRA]
Identical group No.282068 (1 seq.)
>SRA1026151
SRR035085.153766
454 Sequencing (SRP001806)
199
124
-
Asp
GTC
[SRA]
Identical group No.282082 (1 seq.)
>SRA1026229
SRR035085.167243
454 Sequencing (SRP001806)
418
492
+
Asp
GTC
[SRA]
Identical group No.400007 (1 seq.)
>SRA1026076
SRR035085.138785
454 Sequencing (SRP001806)
143
70
-
Asp
GTC
[SRA]
Identical group No.480699 (1 seq.)
>SRA1026142
SRR035085.152594
454 Sequencing (SRP001806)
166
93
-
Asp
GTC
[SRA]
Identical group No.480714 (1 seq.)
>SRA1026458
SRR035085.210557
454 Sequencing (SRP001806)
128
200
+
Asp
GTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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