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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = GTG
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240798 (1 seq.)
>SRA1025798
SRR035085.85564
454 Sequencing (SRP001806)
61
137
+
His
GTG
[SRA]
Identical group No.272339 (1 seq.)
>SRA1026005
SRR035085.125050
454 Sequencing (SRP001806)
359
283
-
His
GTG
[SRA]
Identical group No.453230 (1 seq.)
>SRA1025562
SRR035085.39654
454 Sequencing (SRP001806)
268
340
+
His
GTG
[SRA]
Identical group No.453454 (1 seq.)
>SRA1026829
SRR035085.305476
454 Sequencing (SRP001806)
106
181
+
His
GTG
[SRA]
Identical group No.654259 (1 seq.)
>SRA1025665
SRR035085.62692
454 Sequencing (SRP001806)
282
356
+
His
GTG
[SRA]
Identical group No.654268 (1 seq.)
>SRA1025747
SRR035085.75700
454 Sequencing (SRP001806)
117
189
+
His
GTG
[SRA]
Identical group No.654269 (1 seq.)
>SRA1025749
SRR035085.76194
454 Sequencing (SRP001806)
88
14
-
His
GTG
[SRA]
Identical group No.654316 (1 seq.)
>SRA1026082
SRR035085.140028
454 Sequencing (SRP001806)
119
193
+
His
GTG
[SRA]
Identical group No.654361 (1 seq.)
>SRA1026405
SRR035085.202125
454 Sequencing (SRP001806)
94
168
+
His
GTG
[SRA]
Identical group No.654659 (1 seq.)
>SRA1025999
SRR035085.124249
454 Sequencing (SRP001806)
197
123
-
His
GTG
[SRA]
Identical group No.779835 (1 seq.)
>SRA1026459
SRR035085.210557
454 Sequencing (SRP001806)
203
275
+
His
GTG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK