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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = GTT
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30437 (3 seq.)
>SRA1025647
SRR035085.56057
454 Sequencing (SRP001806)
80
167
+
Asn
GTT
[SRA]
>SRA1025951
SRR035085.115442
454 Sequencing (SRP001806)
80
167
+
Asn
GTT
[SRA]
>SRA1026480
SRR035085.213805
454 Sequencing (SRP001806)
80
167
+
Asn
GTT
[SRA]
Identical group No.272277 (1 seq.)
>SRA1025627
SRR035085.53087
454 Sequencing (SRP001806)
202
127
-
Asn
GTT
[SRA]
Identical group No.272381 (1 seq.)
>SRA1026266
SRR035085.175346
454 Sequencing (SRP001806)
99
23
-
Asn
GTT
[SRA]
Identical group No.272412 (1 seq.)
>SRA1026462
SRR035085.211629
454 Sequencing (SRP001806)
260
187
-
Asn
GTT
[SRA]
Identical group No.272472 (1 seq.)
>SRA1026727
SRR035085.274687
454 Sequencing (SRP001806)
220
145
-
Asn
GTT
[SRA]
Identical group No.272486 (1 seq.)
>SRA1026815
SRR035085.299389
454 Sequencing (SRP001806)
101
25
-
Asn
GTT
[SRA]
Identical group No.453222 (1 seq.)
>SRA1025528
SRR035085.33997
454 Sequencing (SRP001806)
331
406
+
Asn
GTT
[SRA]
Identical group No.453299 (1 seq.)
>SRA1025878
SRR035085.100919
454 Sequencing (SRP001806)
117
45
-
Asn
GTT
[SRA]
Identical group No.453358 (1 seq.)
>SRA1026188
SRR035085.160990
454 Sequencing (SRP001806)
150
225
+
Asn
GTT
[SRA]
Identical group No.453387 (1 seq.)
>SRA1026364
SRR035085.193725
454 Sequencing (SRP001806)
37
109
+
Asn
GTT
[SRA]
Identical group No.453436 (1 seq.)
>SRA1026713
SRR035085.268049
454 Sequencing (SRP001806)
469
394
-
Asn
GTT
[SRA]
Identical group No.654329 (1 seq.)
>SRA1026187
SRR035085.160732
454 Sequencing (SRP001806)
271
196
-
Asn
GTT
[SRA]
Identical group No.654394 (1 seq.)
>SRA1026640
SRR035085.246808
454 Sequencing (SRP001806)
332
258
-
Asn
GTT
[SRA]
Identical group No.779985 (1 seq.)
>SRA1025717
SRR035085.70610
454 Sequencing (SRP001806)
244
171
-
Asn
GTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK