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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = TAA
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45855 (1 seq.)
>SRA1026656
SRR035085.251280
454 Sequencing (SRP001806)
117
206
+
Leu
TAA
[SRA]
Identical group No.112513 (1 seq.)
>SRA1025513
SRR035085.29104
454 Sequencing (SRP001806)
49
133
+
Leu
TAA
[SRA]
Identical group No.112529 (1 seq.)
>SRA1026027
SRR035085.129829
454 Sequencing (SRP001806)
254
340
+
Leu
TAA
[SRA]
Identical group No.112532 (1 seq.)
>SRA1026069
SRR035085.135982
454 Sequencing (SRP001806)
91
177
+
Leu
TAA
[SRA]
Identical group No.112541 (1 seq.)
>SRA1026281
SRR035085.178721
454 Sequencing (SRP001806)
415
498
+
Leu
TAA
[SRA]
Identical group No.112544 (1 seq.)
>SRA1026483
SRR035085.214002
454 Sequencing (SRP001806)
366
449
+
Leu
TAA
[SRA]
Identical group No.112553 (1 seq.)
>SRA1026687
SRR035085.260505
454 Sequencing (SRP001806)
243
327
+
Leu
TAA
[SRA]
Identical group No.153857 (1 seq.)
>SRA1026112
SRR035085.146319
454 Sequencing (SRP001806)
299
216
-
Leu
TAA
[SRA]
Identical group No.153867 (1 seq.)
>SRA1026818
SRR035085.299904
454 Sequencing (SRP001806)
176
92
-
Leu
TAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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