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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = TAC
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.155901 (1 seq.)
>SRA1025515
SRR035085.29724
454 Sequencing (SRP001806)
272
348
+
Val
TAC
[SRA]
Identical group No.155919 (2 seq.)
>SRA1025913
SRR035085.108752
454 Sequencing (SRP001806)
387
310
-
Val
TAC
[SRA]
>SRA1026245
SRR035085.170520
454 Sequencing (SRP001806)
391
314
-
Val
TAC
[SRA]
Identical group No.155925 (1 seq.)
>SRA1026064
SRR035085.135130
454 Sequencing (SRP001806)
224
147
-
Val
TAC
[SRA]
Identical group No.177305 (1 seq.)
>SRA1025586
SRR035085.42337
454 Sequencing (SRP001806)
177
101
-
Val
TAC
[SRA]
Identical group No.177395 (1 seq.)
>SRA1026184
SRR035085.160063
454 Sequencing (SRP001806)
197
123
-
Val
TAC
[SRA]
Identical group No.177465 (1 seq.)
>SRA1026604
SRR035085.238344
454 Sequencing (SRP001806)
254
179
-
Val
TAC
[SRA]
Identical group No.281954 (1 seq.)
>SRA1025561
SRR035085.39654
454 Sequencing (SRP001806)
193
266
+
Val
TAC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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