This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = TAG
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.99996 (1 seq.)
>SRA1025655
SRR035085.59118
454 Sequencing (SRP001806)
115
197
+
Leu
TAG
[SRA]
Identical group No.100007 (1 seq.)
>SRA1026087
SRR035085.140750
454 Sequencing (SRP001806)
282
367
+
Leu
TAG
[SRA]
Identical group No.117980 (3 seq.)
>SRA1025556
SRR035085.38732
454 Sequencing (SRP001806)
316
234
-
Leu
TAG
[SRA]
>SRA1025809
SRR035085.87441
454 Sequencing (SRP001806)
317
235
-
Leu
TAG
[SRA]
>SRA1026101
SRR035085.143553
454 Sequencing (SRP001806)
317
235
-
Leu
TAG
[SRA]
Identical group No.117983 (1 seq.)
>SRA1025783
SRR035085.81994
454 Sequencing (SRP001806)
63
147
+
Leu
TAG
[SRA]
Identical group No.117984 (1 seq.)
>SRA1025862
SRR035085.96510
454 Sequencing (SRP001806)
284
366
+
Leu
TAG
[SRA]
Identical group No.117989 (1 seq.)
>SRA1026145
SRR035085.153145
454 Sequencing (SRP001806)
60
144
+
Leu
TAG
[SRA]
Identical group No.117995 (1 seq.)
>SRA1026369
SRR035085.194311
454 Sequencing (SRP001806)
164
245
+
Leu
TAG
[SRA]
Identical group No.117998 (3 seq.)
>SRA1026436
SRR035085.206434
454 Sequencing (SRP001806)
90
6
-
Leu
TAG
[SRA]
>SRA1026442
SRR035085.207400
454 Sequencing (SRP001806)
90
6
-
Leu
TAG
[SRA]
>SRA1026796
SRR035085.292677
454 Sequencing (SRP001806)
90
6
-
Leu
TAG
[SRA]
Identical group No.118007 (1 seq.)
>SRA1026593
SRR035085.234607
454 Sequencing (SRP001806)
63
147
+
Leu
TAG
[SRA]
Identical group No.177481 (1 seq.)
>SRA1026690
SRR035085.261730
454 Sequencing (SRP001806)
82
155
+
Leu
TAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK