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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = TAT
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.8253 (1 seq.)
>SRA1026406
SRR035085.202125
454 Sequencing (SRP001806)
174
267
+
Ile
TAT
[SRA]
Identical group No.240837 (1 seq.)
>SRA1026665
SRR035085.253875
454 Sequencing (SRP001806)
354
278
-
Ile
TAT
[SRA]
Identical group No.272427 (1 seq.)
>SRA1026517
SRR035085.220058
454 Sequencing (SRP001806)
117
41
-
Ile
TAT
[SRA]
Identical group No.272448 (1 seq.)
>SRA1026632
SRR035085.245768
454 Sequencing (SRP001806)
386
462
+
Ile
TAT
[SRA]
Identical group No.654320 (1 seq.)
>SRA1026125
SRR035085.148452
454 Sequencing (SRP001806)
91
165
+
Ile
TAT
[SRA]
Identical group No.654408 (1 seq.)
>SRA1026778
SRR035085.288054
454 Sequencing (SRP001806)
90
16
-
Ile
TAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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