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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = TCT
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272269 (1 seq.)
>SRA1025587
SRR035085.42561
454 Sequencing (SRP001806)
42
115
+
Arg
TCT
[SRA]
Identical group No.272340 (1 seq.)
>SRA1026014
SRR035085.126673
454 Sequencing (SRP001806)
239
315
+
Arg
TCT
[SRA]
Identical group No.272352 (1 seq.)
>SRA1026081
SRR035085.140028
454 Sequencing (SRP001806)
30
108
+
Arg
TCT
[SRA]
Identical group No.272354 (2 seq.)
>SRA1026095
SRR035085.141508
454 Sequencing (SRP001806)
344
268
-
Arg
TCT
[SRA]
>SRA1026425
SRR035085.205174
454 Sequencing (SRP001806)
344
268
-
Arg
TCT
[SRA]
Identical group No.272378 (1 seq.)
>SRA1026244
SRR035085.170482
454 Sequencing (SRP001806)
389
465
+
Arg
TCT
[SRA]
Identical group No.272402 (1 seq.)
>SRA1026410
SRR035085.202914
454 Sequencing (SRP001806)
432
357
-
Arg
TCT
[SRA]
Identical group No.272433 (1 seq.)
>SRA1026558
SRR035085.227546
454 Sequencing (SRP001806)
44
118
+
Arg
TCT
[SRA]
Identical group No.453339 (1 seq.)
>SRA1026089
SRR035085.140926
454 Sequencing (SRP001806)
275
350
+
Arg
TCT
[SRA]
Identical group No.654304 (1 seq.)
>SRA1025971
SRR035085.119443
454 Sequencing (SRP001806)
106
33
-
Arg
TCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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