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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = TGA
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.8248 (1 seq.)
>SRA1025838
SRR035085.92694
454 Sequencing (SRP001806)
188
95
-
Ser
TGA
[SRA]
Identical group No.30411 (1 seq.)
>SRA1026677
SRR035085.256561
454 Sequencing (SRP001806)
123
33
-
Ser
TGA
[SRA]
Identical group No.45840 (2 seq.)
>SRA1025453
SRR035085.9962
454 Sequencing (SRP001806)
182
270
+
Ser
TGA
[SRA]
>SRA1026071
SRR035085.136417
454 Sequencing (SRP001806)
258
170
-
Ser
TGA
[SRA]
Identical group No.45844 (1 seq.)
>SRA1025703
SRR035085.69507
454 Sequencing (SRP001806)
151
237
+
Ser
TGA
[SRA]
Identical group No.45847 (1 seq.)
>SRA1025897
SRR035085.105098
454 Sequencing (SRP001806)
270
359
+
Ser
TGA
[SRA]
Identical group No.45852 (1 seq.)
>SRA1026342
SRR035085.189303
454 Sequencing (SRP001806)
338
426
+
Ser
TGA
[SRA]
Identical group No.45892 (1 seq.)
>SRA1026114
SRR035085.146531
454 Sequencing (SRP001806)
140
226
+
Ser
TGA
[SRA]
Identical group No.72771 (2 seq.)
>SRA1026289
SRR035085.180416
454 Sequencing (SRP001806)
8
93
+
Ser
TGA
[SRA]
>SRA1026537
SRR035085.223294
454 Sequencing (SRP001806)
8
93
+
Ser
TGA
[SRA]
Identical group No.72772 (1 seq.)
>SRA1026345
SRR035085.190045
454 Sequencing (SRP001806)
75
163
+
Ser
TGA
[SRA]
Identical group No.87037 (1 seq.)
>SRA1026331
SRR035085.186784
454 Sequencing (SRP001806)
396
309
-
Ser
TGA
[SRA]
Identical group No.87039 (1 seq.)
>SRA1026376
SRR035085.195671
454 Sequencing (SRP001806)
116
28
-
Ser
TGA
[SRA]
Identical group No.153926 (1 seq.)
>SRA1026162
SRR035085.156162
454 Sequencing (SRP001806)
373
457
+
Ser
TGA
[SRA]
Identical group No.180212 (1 seq.)
>SRA1026478
SRR035085.213791
454 Sequencing (SRP001806)
481
397
-
Ser
TGA
[SRA]
Identical group No.180215 (1 seq.)
>SRA1026533
SRR035085.222531
454 Sequencing (SRP001806)
189
273
+
Ser
TGA
[SRA]
Identical group No.218063 (2 seq.)
>SRA1026252
SRR035085.172461
454 Sequencing (SRP001806)
277
195
-
Ser
TGA
[SRA]
>SRA1026372
SRR035085.194881
454 Sequencing (SRP001806)
277
195
-
Ser
TGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK