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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = TGC
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.155944 (1 seq.)
>SRA1026573
SRR035085.231212
454 Sequencing (SRP001806)
115
40
-
Ala
TGC
[SRA]
Identical group No.156050 (1 seq.)
>SRA1026211
SRR035085.164050
454 Sequencing (SRP001806)
308
382
+
Ala
TGC
[SRA]
Identical group No.177330 (1 seq.)
>SRA1025716
SRR035085.70610
454 Sequencing (SRP001806)
403
327
-
Ala
TGC
[SRA]
Identical group No.282063 (1 seq.)
>SRA1026124
SRR035085.148396
454 Sequencing (SRP001806)
157
232
+
Ala
TGC
[SRA]
Identical group No.282107 (1 seq.)
>SRA1026432
SRR035085.206208
454 Sequencing (SRP001806)
118
44
-
Ala
TGC
[SRA]
Identical group No.282121 (1 seq.)
>SRA1026561
SRR035085.228013
454 Sequencing (SRP001806)
7
82
+
Ala
TGC
[SRA]
Identical group No.282123 (1 seq.)
>SRA1026581
SRR035085.232643
454 Sequencing (SRP001806)
124
197
+
Ala
TGC
[SRA]
Identical group No.399665 (1 seq.)
>SRA1025946
SRR035085.114895
454 Sequencing (SRP001806)
11
85
+
Ala
TGC
[SRA]
Identical group No.480700 (1 seq.)
>SRA1026157
SRR035085.154962
454 Sequencing (SRP001806)
172
99
-
Ala
TGC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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