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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = TGG
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.46724 (1 seq.)
>SRA1026261
SRR035085.174376
454 Sequencing (SRP001806)
149
64
-
Pro
TGG
[SRA]
Identical group No.155930 (1 seq.)
>SRA1026218
SRR035085.165367
454 Sequencing (SRP001806)
495
569
+
Pro
TGG
[SRA]
Identical group No.155945 (1 seq.)
>SRA1026582
SRR035085.232701
454 Sequencing (SRP001806)
408
482
+
Pro
TGG
[SRA]
Identical group No.155948 (1 seq.)
>SRA1026606
SRR035085.239220
454 Sequencing (SRP001806)
309
232
-
Pro
TGG
[SRA]
Identical group No.177317 (1 seq.)
>SRA1025658
SRR035085.59678
454 Sequencing (SRP001806)
246
322
+
Pro
TGG
[SRA]
Identical group No.177320 (1 seq.)
>SRA1025671
SRR035085.64416
454 Sequencing (SRP001806)
425
349
-
Pro
TGG
[SRA]
Identical group No.177352 (1 seq.)
>SRA1025859
SRR035085.95804
454 Sequencing (SRP001806)
315
240
-
Pro
TGG
[SRA]
Identical group No.177355 (1 seq.)
>SRA1025889
SRR035085.103526
454 Sequencing (SRP001806)
493
418
-
Pro
TGG
[SRA]
Identical group No.281961 (1 seq.)
>SRA1025584
SRR035085.42204
454 Sequencing (SRP001806)
469
395
-
Pro
TGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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