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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = TGT
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.177449 (1 seq.)
>SRA1026506
SRR035085.218131
454 Sequencing (SRP001806)
178
254
+
Thr
TGT
[SRA]
Identical group No.282074 (1 seq.)
>SRA1026180
SRR035085.159433
454 Sequencing (SRP001806)
54
129
+
Thr
TGT
[SRA]
Identical group No.282126 (1 seq.)
>SRA1026610
SRR035085.239564
454 Sequencing (SRP001806)
40
115
+
Thr
TGT
[SRA]
Identical group No.282151 (1 seq.)
>SRA1026790
SRR035085.292007
454 Sequencing (SRP001806)
181
107
-
Thr
TGT
[SRA]
Identical group No.399679 (2 seq.)
>SRA1026059
SRR035085.134164
454 Sequencing (SRP001806)
185
114
-
Thr
TGT
[SRA]
>SRA1026540
SRR035085.223759
454 Sequencing (SRP001806)
185
114
-
Thr
TGT
[SRA]
Identical group No.399708 (1 seq.)
>SRA1026306
SRR035085.182820
454 Sequencing (SRP001806)
448
374
-
Thr
TGT
[SRA]
Identical group No.480663 (1 seq.)
>SRA1025596
SRR035085.44725
454 Sequencing (SRP001806)
183
113
-
Thr
TGT
[SRA]
Identical group No.480673 (2 seq.)
>SRA1025661
SRR035085.60399
454 Sequencing (SRP001806)
421
351
-
Thr
TGT
[SRA]
>SRA1025694
SRR035085.67824
454 Sequencing (SRP001806)
421
351
-
Thr
TGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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